Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_M17
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein L23|Schizosac...   192   6e-50
SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein L23|Schizosacc...   192   6e-50
SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit L38|...    47   4e-06
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    28   1.6  
SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   3.6  
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate...    26   6.3  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    26   8.3  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    26   8.3  
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    26   8.3  

>SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein
           L23|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 139

 Score =  192 bits (468), Expect = 6e-50
 Identities = 84/108 (77%), Positives = 100/108 (92%)
 Frame = +2

Query: 161 AVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIR 340
           A++NCADN+GAKNLY+++V G   RLNRLPAA  GDM++ATVKKGKP+LRKK+MPA+V+R
Sbjct: 23  AIMNCADNSGAKNLYIVSVFGTGARLNRLPAASCGDMVLATVKKGKPDLRKKIMPAIVVR 82

Query: 341 QRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 484
           QRK +RR+DGV++YFEDNAGVIVN KGEMKGSAITGPVAKECADLWPR
Sbjct: 83  QRKAWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADLWPR 130



 Score = 30.7 bits (66), Expect = 0.29
 Identities = 11/18 (61%), Positives = 16/18 (88%)
 Frame = +1

Query: 100 RGRGGSAGAKFRISLGLP 153
           RGRG ++G K+R++LGLP
Sbjct: 3   RGRGAASGTKYRMTLGLP 20


>SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein
           L23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score =  192 bits (468), Expect = 6e-50
 Identities = 84/108 (77%), Positives = 100/108 (92%)
 Frame = +2

Query: 161 AVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIR 340
           A++NCADN+GAKNLY+++V G   RLNRLPAA  GDM++ATVKKGKP+LRKK+MPA+V+R
Sbjct: 23  AIMNCADNSGAKNLYIVSVFGTGARLNRLPAASCGDMVLATVKKGKPDLRKKIMPAIVVR 82

Query: 341 QRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 484
           QRK +RR+DGV++YFEDNAGVIVN KGEMKGSAITGPVAKECADLWPR
Sbjct: 83  QRKAWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADLWPR 130



 Score = 30.7 bits (66), Expect = 0.29
 Identities = 11/18 (61%), Positives = 16/18 (88%)
 Frame = +1

Query: 100 RGRGGSAGAKFRISLGLP 153
           RGRG ++G K+R++LGLP
Sbjct: 3   RGRGAASGTKYRMTLGLP 20


>SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit
           L38|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 126

 Score = 46.8 bits (106), Expect = 4e-06
 Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 9/79 (11%)
 Frame = +2

Query: 254 AGSGDMIVATVKKGKPEL---------RKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVI 406
           A  GD +V  VKK +            R  +  A+++R + P RR DG ++ F+DNA V+
Sbjct: 31  ASLGDEVVVVVKKARSGSSVTAANKVKRGDIHHAIIVRTKSPVRRPDGRYVRFDDNACVL 90

Query: 407 VNNKGEMKGSAITGPVAKE 463
           VN + E  G+ I   VA E
Sbjct: 91  VNKECEPLGTRILSVVANE 109


>SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 886

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 22/83 (26%), Positives = 36/83 (43%)
 Frame = -1

Query: 405  MTPALSSKYINTPSRLLNGFRCLMTTAGITFFRSSGLPFLTVATIMSPEPAAGSLFRRPL 226
            +  ALSS+Y    S L        +T  +T   SS     T +++ +P P    + R P 
Sbjct: 777  LAKALSSEYTFQKSVLAGLSAATRSTKDLTILLSSSARHYTESSLATPVPLMSPIARVPA 836

Query: 225  IPWTAITYRFFAPVLSAQLITAP 157
             P +A      A  +++ LI +P
Sbjct: 837  TPLSA-ALGSAAQSITSPLIMSP 858


>SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 350

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +3

Query: 555 PSTSKSNPK-NYNLRNRHLQCKCAKLEYTF 641
           P+T+ SN   N+ +RNR    +C+ L  TF
Sbjct: 11  PTTATSNSSLNFFVRNREKSIRCSSLHQTF 40


>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
           transferase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 453

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = +2

Query: 287 KKGKPELRKKVMPAVVIRQRK---PFRRRDGVFIYFEDNA 397
           KKG P  RK   P+++        PF  RD +FI  E NA
Sbjct: 337 KKGAPVFRKH-FPSILQELNSLDPPFYERDAIFIVDEGNA 375


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -1

Query: 435 EPFISPLLLTMTPALSSKYINTPS 364
           +P+  P+L +  P L   Y++ PS
Sbjct: 275 QPYSGPILASTAPTLDGSYLSNPS 298


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1822

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/51 (23%), Positives = 25/51 (49%)
 Frame = -1

Query: 477  HRSAHSLATGPVMAEPFISPLLLTMTPALSSKYINTPSRLLNGFRCLMTTA 325
            + + H    GP++   ++  L     P  +S Y+N  +  L+GF+ ++  A
Sbjct: 963  YNATHFEHIGPMLEATWMPILAALSNPLQNSDYVNELNMCLDGFQLVVRIA 1013


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -1

Query: 483 RGHRSAHSLATGPVMAEPFISPLLL-TMTPALSSKYINTPSRLLNGF 346
           R H+ AH+       AEP ++P++   + P+++    +TPS L   F
Sbjct: 60  RRHKDAHAYDMSLTDAEPALAPVMSPAIPPSMNYPTPSTPSVLPESF 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,883,491
Number of Sequences: 5004
Number of extensions: 56195
Number of successful extensions: 138
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)