Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_M17
(894 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0319 - 16712572-16712654,16712756-16712797,16713955-167142... 201 7e-52
03_01_0276 + 2124538-2124550,2124678-2124962,2126813-2126854,212... 201 7e-52
02_05_1201 + 34929577-34929589,34930252-34930587,34931378-349314... 201 7e-52
12_02_1115 - 26173351-26173725,26174241-26174344,26174812-26174845 66 4e-11
06_01_0221 + 1690978-1692171,1692265-1692276 31 0.94
03_05_0291 - 22837412-22838128 29 3.8
06_03_0961 + 26331266-26332151,26332244-26332393,26332761-26333281 29 5.0
03_06_0296 + 32901696-32901892,32901989-32902232,32903992-329041... 29 6.6
02_02_0500 - 10993675-10994067,10994434-10995738 29 6.6
08_01_0935 - 9218271-9219860,9219959-9220232,9220506-9221767 28 8.7
06_03_0458 - 20995834-20996004,20996404-20997309,20997778-209979... 28 8.7
01_06_0125 + 26711157-26713297,26715026-26715206 28 8.7
>10_08_0319 -
16712572-16712654,16712756-16712797,16713955-16714239,
16714346-16714358
Length = 140
Score = 201 bits (490), Expect = 7e-52
Identities = 88/108 (81%), Positives = 103/108 (95%)
Frame = +2
Query: 161 AVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIR 340
A +NCADNTGAKNLY+I+V+GIKGRLNRLP+A GDM++ATVKKGKP+LRKKVMPAV++R
Sbjct: 24 ATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVR 83
Query: 341 QRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 484
QRKP+RR+DGV++YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPR
Sbjct: 84 QRKPWRRKDGVYMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 131
Score = 43.2 bits (97), Expect = 3e-04
Identities = 19/25 (76%), Positives = 22/25 (88%)
Frame = +1
Query: 91 MSKRGRGGSAGAKFRISLGLPXGSS 165
MSKRGRGGSAG KFR+SLGLP ++
Sbjct: 1 MSKRGRGGSAGNKFRMSLGLPVAAT 25
>03_01_0276 +
2124538-2124550,2124678-2124962,2126813-2126854,
2126943-2127025
Length = 140
Score = 201 bits (490), Expect = 7e-52
Identities = 88/108 (81%), Positives = 103/108 (95%)
Frame = +2
Query: 161 AVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIR 340
A +NCADNTGAKNLY+I+V+GIKGRLNRLP+A GDM++ATVKKGKP+LRKKVMPAV++R
Sbjct: 24 ATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVR 83
Query: 341 QRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 484
QRKP+RR+DGV++YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPR
Sbjct: 84 QRKPWRRKDGVYMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 131
Score = 43.2 bits (97), Expect = 3e-04
Identities = 19/25 (76%), Positives = 22/25 (88%)
Frame = +1
Query: 91 MSKRGRGGSAGAKFRISLGLPXGSS 165
MSKRGRGGSAG KFR+SLGLP ++
Sbjct: 1 MSKRGRGGSAGNKFRMSLGLPVAAT 25
>02_05_1201 +
34929577-34929589,34930252-34930587,34931378-34931419,
34931630-34931712
Length = 157
Score = 201 bits (490), Expect = 7e-52
Identities = 88/108 (81%), Positives = 103/108 (95%)
Frame = +2
Query: 161 AVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIR 340
A +NCADNTGAKNLY+I+V+GIKGRLNRLP+A GDM++ATVKKGKP+LRKKVMPAV++R
Sbjct: 41 ATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVR 100
Query: 341 QRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 484
QRKP+RR+DGV++YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPR
Sbjct: 101 QRKPWRRKDGVYMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 148
Score = 35.5 bits (78), Expect = 0.057
Identities = 15/21 (71%), Positives = 18/21 (85%)
Frame = +1
Query: 103 GRGGSAGAKFRISLGLPXGSS 165
GRGGSAG KFR+SLGLP ++
Sbjct: 22 GRGGSAGNKFRMSLGLPVAAT 42
>12_02_1115 - 26173351-26173725,26174241-26174344,26174812-26174845
Length = 170
Score = 66.1 bits (154), Expect = 4e-11
Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 3/102 (2%)
Frame = +2
Query: 167 INCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKK---VMPAVVI 337
+ DN+GAK V+ +Q ++G+ A GD I+ +VK+ +P + K V+ VV+
Sbjct: 58 LKVVDNSGAKR--VMCIQSLRGK----KGARLGDTIIGSVKEAQPRGKVKKGDVVYGVVV 111
Query: 338 RQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKE 463
R R DG I F+DNA V+VNNKGE+ G+ + GPV E
Sbjct: 112 RAAMKRGRNDGSEIQFDDNAIVLVNNKGELIGTRVFGPVPHE 153
>06_01_0221 + 1690978-1692171,1692265-1692276
Length = 401
Score = 31.5 bits (68), Expect = 0.94
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -1
Query: 285 TVATIMSPEPAAGSLFRRPLIPWTAITYRFFAPVLSAQLITA-PXWETQGDTE 130
++A + S P + + FRR L+P+ A F A S LI A P + +GD E
Sbjct: 160 SLAVLSSSFPPSSAAFRRELLPYMAPLLAFLAKTGSPFLINAYPYFAYKGDPE 212
>03_05_0291 - 22837412-22838128
Length = 238
Score = 29.5 bits (63), Expect = 3.8
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = -1
Query: 498 AFEAIRGHRSAHSLATGPVMAEPFI--SPLLLTMTPALSS 385
+++A+ GH+++H T P MA + P T +PA SS
Sbjct: 100 SYQALGGHKTSHRPRTPPTMAAVVVVDEPAATTASPAASS 139
>06_03_0961 + 26331266-26332151,26332244-26332393,26332761-26333281
Length = 518
Score = 29.1 bits (62), Expect = 5.0
Identities = 21/78 (26%), Positives = 29/78 (37%)
Frame = +1
Query: 100 RGRGGSAGAKFRISLGLPXGSSNQLRRQHRGKESVCDRCPRYQRSPEQTAGGRFRGHDCG 279
RG GGS+ +GL +S + G C C RS GG + G + G
Sbjct: 177 RGHGGSSSIGSGSGVGL-GATSGVGAGSNVGPSGGCSTCGSGSRSGSGAGGGSYSGSNSG 235
Query: 280 HSQKG*T*TPEKGNAGSG 333
S + + GSG
Sbjct: 236 SSSSSGSGSNSNSIGGSG 253
>03_06_0296 +
32901696-32901892,32901989-32902232,32903992-32904112,
32904219-32904406
Length = 249
Score = 28.7 bits (61), Expect = 6.6
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -3
Query: 403 DTRIVLKVYKYSITPSERFPLPDDHCRHYLFPEFRFTLFDCGHNHV 266
+ I+++ Y+ T +R P P D + +F F L+DC +N V
Sbjct: 101 EINIIIEAYR---TLRDRGPYPADQVVRDINGKFAFVLYDCSNNSV 143
>02_02_0500 - 10993675-10994067,10994434-10995738
Length = 565
Score = 28.7 bits (61), Expect = 6.6
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Frame = -1
Query: 447 PVMAEPFISPLLLTMTPALSSKYINTPSRLLNGFRCLMTT---AGITFFR-SSGLPFLTV 280
P EP I+ + ++PA+ +T S + NG+ +M+T G+ F + SSG + V
Sbjct: 225 PAPVEPIIANGKVKLSPAVMEMIYSTISGIENGYLPVMSTEGSGGVYFMKDSSGESNVAV 284
Query: 279 ATIMSPEPAA 250
+ EP A
Sbjct: 285 FKPIDEEPMA 294
>08_01_0935 - 9218271-9219860,9219959-9220232,9220506-9221767
Length = 1041
Score = 28.3 bits (60), Expect = 8.7
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 117 RGSEIPYLPGSPXWEQ*STAPTTQ 188
RG+ +P L +P WE+ S APT +
Sbjct: 569 RGAAVPTLKMNPSWEKPSVAPTLE 592
>06_03_0458 -
20995834-20996004,20996404-20997309,20997778-20997942,
20998024-20998353,20998471-20998527,20998579-20998692,
20999220-20999381,20999465-20999527,21001100-21001207,
21001598-21001675,21001771-21001902
Length = 761
Score = 28.3 bits (60), Expect = 8.7
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = +2
Query: 386 EDNAGVIV--NNKGEMKGSAITGPVAKECAD 472
ED +I+ N+KG +GS ITG + + CA+
Sbjct: 715 EDGDKIIMSSNDKGSNQGSFITGKIVESCAE 745
>01_06_0125 + 26711157-26713297,26715026-26715206
Length = 773
Score = 28.3 bits (60), Expect = 8.7
Identities = 24/105 (22%), Positives = 47/105 (44%), Gaps = 3/105 (2%)
Frame = +2
Query: 83 TTKCLREDVVVPRERNSVSPWVSQXGAV---INCADNTGAKNLYVIAVQGIKGRLNRLPA 253
++KC E V ++ S P S+ G+V + + TG ++ ++++ + G R
Sbjct: 472 SSKCGYEKVGADVQKCSPLPRQSEEGSVARGVVSFEETGIATVHPLSIRNLSGPELRNLN 531
Query: 254 AGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFE 388
G G++ V +G P+ +K A + P + + V I E
Sbjct: 532 KGGGELSKKLVVEGSPKYGEKNNDARSEKNSSPLGQSEDVKIIRE 576
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,507,427
Number of Sequences: 37544
Number of extensions: 404751
Number of successful extensions: 1111
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1111
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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