Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_M17
         (894 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_294| Best HMM Match : Ribosomal_L14 (HMM E-Value=4.1e-23)          148   7e-36
SB_49550| Best HMM Match : SSXT (HMM E-Value=5.5)                      29   5.1  
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.7  
SB_52932| Best HMM Match : Ank (HMM E-Value=0)                         28   8.9  
SB_10243| Best HMM Match : Ank (HMM E-Value=0)                         28   8.9  

>SB_294| Best HMM Match : Ribosomal_L14 (HMM E-Value=4.1e-23)
          Length = 145

 Score =  148 bits (358), Expect = 7e-36
 Identities = 69/87 (79%), Positives = 78/87 (89%)
 Frame = +2

Query: 158 GAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVI 337
           GAVINCADNTG KNLY+IAV+GIKGRLNRLPAA SGDM++ATVKKGKPELRKKVMPAVVI
Sbjct: 42  GAVINCADNTGGKNLYIIAVKGIKGRLNRLPAAASGDMVLATVKKGKPELRKKVMPAVVI 101

Query: 338 RQRKPFRRRDGVFIYFEDNAGVIVNNK 418
           RQRK +RR++GVF+YFE N  V V  +
Sbjct: 102 RQRKAYRRKNGVFLYFEANIKVRVRKQ 128



 Score = 37.9 bits (84), Expect = 0.011
 Identities = 15/21 (71%), Positives = 19/21 (90%)
 Frame = +1

Query: 100 RGRGGSAGAKFRISLGLPXGS 162
           RGRGG++G KFRI+LGLP G+
Sbjct: 23  RGRGGTSGGKFRIALGLPVGA 43


>SB_49550| Best HMM Match : SSXT (HMM E-Value=5.5)
          Length = 283

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +3

Query: 540 VSLSFPSTSKSNPKNYNLRNRHLQCK 617
           +SL+ P+T  SN K+ N++ R  QCK
Sbjct: 192 LSLAAPNTGMSNTKHRNVKVRSFQCK 217


>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4865

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -3

Query: 433  ALHFALVIDYDTRIVLKVYKYSITPSERFPLPDDHCRHYL-FPEF 302
            A  FA+   Y  R  L  Y+Y  TPS+ F    D CR  L FP F
Sbjct: 3671 ASRFAMSQAY-VRYFLYTYRYCATPSDLFNFIRDKCRASLRFPLF 3714


>SB_52932| Best HMM Match : Ank (HMM E-Value=0)
          Length = 1266

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 158 GAVINCADNTGAKNLYVIAVQGIKGRLN 241
           GA ++CADN G   L  +A QG    +N
Sbjct: 916 GATVDCADNEGRTPLQAVAWQGCYNLVN 943


>SB_10243| Best HMM Match : Ank (HMM E-Value=0)
          Length = 475

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 158 GAVINCADNTGAKNLYVIAVQGIKGRLN 241
           GA ++CADN G   L  +A QG    +N
Sbjct: 112 GATVDCADNEGRTPLQAVAWQGCYNLVN 139


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,225,305
Number of Sequences: 59808
Number of extensions: 449271
Number of successful extensions: 1037
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2562198215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)