Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_M17
(894 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g04400.1 68416.m00466 60S ribosomal protein L23 (RPL23C) simi... 201 6e-52
At2g33370.1 68415.m04090 60S ribosomal protein L23 (RPL23B) 201 6e-52
At1g04480.1 68414.m00439 60S ribosomal protein L23 (RPL23A) iden... 201 6e-52
At5g46160.2 68418.m05678 ribosomal protein L14 family protein / ... 54 1e-07
At5g46160.1 68418.m05677 ribosomal protein L14 family protein / ... 54 1e-07
At1g17560.1 68414.m02163 ribosomal protein L14 family protein si... 50 3e-06
At1g48700.1 68414.m05450 oxidoreductase, 2OG-Fe(II) oxygenase-re... 29 3.1
At5g61780.1 68418.m07753 tudor domain-containing protein / nucle... 29 4.2
At5g56930.1 68418.m07107 zinc finger (CCCH-type) family protein ... 28 7.3
>At3g04400.1 68416.m00466 60S ribosomal protein L23 (RPL23C) similar
to ribosomal protein L17 GB:AAA34113.1 from [Nicotiana
tabacum]
Length = 140
Score = 201 bits (490), Expect = 6e-52
Identities = 88/108 (81%), Positives = 103/108 (95%)
Frame = +2
Query: 161 AVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIR 340
A +NCADNTGAKNLY+I+V+GIKGRLNRLP+A GDM++ATVKKGKP+LRKKV+PAV++R
Sbjct: 24 ATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVR 83
Query: 341 QRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 484
QRKP+RR+DGVF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPR
Sbjct: 84 QRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 131
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/25 (68%), Positives = 22/25 (88%)
Frame = +1
Query: 91 MSKRGRGGSAGAKFRISLGLPXGSS 165
MSKRGRGG++G KFR+SLGLP ++
Sbjct: 1 MSKRGRGGTSGNKFRMSLGLPVAAT 25
>At2g33370.1 68415.m04090 60S ribosomal protein L23 (RPL23B)
Length = 140
Score = 201 bits (490), Expect = 6e-52
Identities = 88/108 (81%), Positives = 103/108 (95%)
Frame = +2
Query: 161 AVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIR 340
A +NCADNTGAKNLY+I+V+GIKGRLNRLP+A GDM++ATVKKGKP+LRKKV+PAV++R
Sbjct: 24 ATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVR 83
Query: 341 QRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 484
QRKP+RR+DGVF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPR
Sbjct: 84 QRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 131
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/25 (68%), Positives = 22/25 (88%)
Frame = +1
Query: 91 MSKRGRGGSAGAKFRISLGLPXGSS 165
MSKRGRGG++G KFR+SLGLP ++
Sbjct: 1 MSKRGRGGTSGNKFRMSLGLPVAAT 25
>At1g04480.1 68414.m00439 60S ribosomal protein L23 (RPL23A)
identical to GB:AAB80655
Length = 140
Score = 201 bits (490), Expect = 6e-52
Identities = 88/108 (81%), Positives = 103/108 (95%)
Frame = +2
Query: 161 AVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIR 340
A +NCADNTGAKNLY+I+V+GIKGRLNRLP+A GDM++ATVKKGKP+LRKKV+PAV++R
Sbjct: 24 ATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVR 83
Query: 341 QRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 484
QRKP+RR+DGVF+YFEDNAGVIVN KGEMKGSAITGP+ KECADLWPR
Sbjct: 84 QRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 131
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/25 (68%), Positives = 22/25 (88%)
Frame = +1
Query: 91 MSKRGRGGSAGAKFRISLGLPXGSS 165
MSKRGRGG++G KFR+SLGLP ++
Sbjct: 1 MSKRGRGGTSGNKFRMSLGLPVAAT 25
>At5g46160.2 68418.m05678 ribosomal protein L14 family protein /
huellenlos paralog (HLP) contains Pfam profile PF00238:
Ribosomal protein L14p/L23e; identical to cDNA
HUELLENLOS PARALOG (HLP) nuclear gene for mitochondrial
product GU:18140859
Length = 172
Score = 54.0 bits (124), Expect = 1e-07
Identities = 41/114 (35%), Positives = 60/114 (52%), Gaps = 10/114 (8%)
Frame = +2
Query: 152 QXGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKK---VM 322
Q G V+ DN+GAK V+ +Q +KG+ A GD IVA+VK+ P + K V+
Sbjct: 48 QMGTVLKVVDNSGAKK--VMCIQALKGK----KGARLGDTIVASVKEAMPNGKVKKGAVV 101
Query: 323 PAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMK-------GSAITGPVAKE 463
VV+R R DG + F+DNA V+V++K + G+ + GPV E
Sbjct: 102 YGVVVRAAMQRGRVDGSEVRFDDNAVVLVDSKDKNTKTDRQPIGTRVFGPVPHE 155
>At5g46160.1 68418.m05677 ribosomal protein L14 family protein /
huellenlos paralog (HLP) contains Pfam profile PF00238:
Ribosomal protein L14p/L23e; identical to cDNA
HUELLENLOS PARALOG (HLP) nuclear gene for mitochondrial
product GU:18140859
Length = 173
Score = 54.0 bits (124), Expect = 1e-07
Identities = 41/114 (35%), Positives = 60/114 (52%), Gaps = 10/114 (8%)
Frame = +2
Query: 152 QXGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKK---VM 322
Q G V+ DN+GAK V+ +Q +KG+ A GD IVA+VK+ P + K V+
Sbjct: 49 QMGTVLKVVDNSGAKK--VMCIQALKGK----KGARLGDTIVASVKEAMPNGKVKKGAVV 102
Query: 323 PAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMK-------GSAITGPVAKE 463
VV+R R DG + F+DNA V+V++K + G+ + GPV E
Sbjct: 103 YGVVVRAAMQRGRVDGSEVRFDDNAVVLVDSKDKNTKTDRQPIGTRVFGPVPHE 156
>At1g17560.1 68414.m02163 ribosomal protein L14 family protein
similar to GB:Z98756 from (Mycobacterium leprae)
Length = 196
Score = 49.6 bits (113), Expect = 3e-06
Identities = 39/109 (35%), Positives = 57/109 (52%), Gaps = 15/109 (13%)
Frame = +2
Query: 152 QXGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKV---- 319
Q G ++ C DN+ AK V+ +Q ++G+ A GD+IV +VK+ P ++KKV
Sbjct: 50 QMGTILKCVDNSCAKE--VMCIQSLRGK----KGARLGDIIVGSVKEANPIVQKKVKKDA 103
Query: 320 MP-----------AVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKG 433
+P VV+R P R DG + F+DNA V+V K E KG
Sbjct: 104 IPKGKVKKGMVVYGVVVRAAMPKGRADGSQVKFDDNAIVVVGIK-EKKG 151
>At1g48700.1 68414.m05450 oxidoreductase, 2OG-Fe(II)
oxygenase-related contains weak hit to Pfam PF03171:
oxidoreductase, 2OG-Fe(II) oxygenase family
Length = 286
Score = 29.5 bits (63), Expect = 3.1
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = -3
Query: 409 DYDTRIVLKVYKYSITPSE-RFPL--PDDHCRHYLFPEFRFTLFDCGHNHVPGTGRRQSV 239
D+ +++L+V + +E F + PD+ ++ FPE T+FD + G +
Sbjct: 91 DFSEKLLLEVENFRKWANETNFTIRRPDNTSKYVFFPEVCGTMFDSHYGFFIENGEDRDA 150
Query: 238 QATFDTLDSDHIQILC 191
F DSD +C
Sbjct: 151 DVGFHVEDSDITLNVC 166
>At5g61780.1 68418.m07753 tudor domain-containing protein / nuclease
family protein contains Pfam domains PF00567: Tudor
domain and PF00565: Staphylococcal nuclease homologue
Length = 985
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = -3
Query: 325 RHYLFPEFRFTLFDCGHNHVPGTGRRQSVQ 236
R YL PEF+F P GRRQS Q
Sbjct: 204 RVYLLPEFQFVQVFVAGLQAPSMGRRQSTQ 233
>At5g56930.1 68418.m07107 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 675
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -3
Query: 397 RIVLKVYKYSITPSERFPLPDDHCRHYL 314
RI L V K + P P P +CRHYL
Sbjct: 333 RIALGVKKLKLKPVAPKPKPIKYCRHYL 360
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,324,813
Number of Sequences: 28952
Number of extensions: 305404
Number of successful extensions: 816
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2100696768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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