Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_M16
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein...    26   8.2  
SPAPB1A10.14 |||F-box protein, unnamed|Schizosaccharomyces pombe...    26   8.2  

>SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein
           Stg1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 174

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -2

Query: 644 RTLPNSERGSGGDAADSAPRVTRAQQ*QQAECTIASLVY 528
           +  P   RG G   A+  PRV  AQQ ++    + SL Y
Sbjct: 110 KMFPGKVRGLGPKLAEKKPRVFSAQQQREFREGVNSLQY 148


>SPAPB1A10.14 |||F-box protein, unnamed|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 243

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 9/43 (20%), Positives = 23/43 (53%)
 Frame = +2

Query: 122 IYYETQQTRKNSLILNXXK*LVKFXPLHNISSTKYVTYSITSI 250
           + ++ QQT    L +     ++++ P H++  + + +Y +T I
Sbjct: 22  VNFDAQQTSSTLLPVEVIDSVMQYLPAHDVIQSSFASYPLTLI 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,580,245
Number of Sequences: 5004
Number of extensions: 42905
Number of successful extensions: 51
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)