Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_M14
(876 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 234 1e-62
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 129 6e-31
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 128 8e-31
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 107 2e-24
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 76 8e-15
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 69 9e-13
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 68 2e-12
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 50 3e-07
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 33 0.071
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.12
SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual 30 0.50
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch... 28 2.0
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 6.1
SPAC29A4.20 |||RNA polymerase II elongator complex, histone acet... 26 8.1
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 8.1
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 234 bits (573), Expect = 1e-62
Identities = 108/119 (90%), Positives = 111/119 (93%)
Frame = +3
Query: 306 PAIRXVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVA 485
P +MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVA
Sbjct: 38 PRHHGIMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVA 97
Query: 486 PEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSG 662
PEEHP LLTEAPLNPK+NREKMTQI+FETFN PA YVAIQAVLSLYASGRTTGIVLDSG
Sbjct: 98 PEEHPCLLTEAPLNPKSNREKMTQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSG 156
Score = 103 bits (246), Expect = 4e-23
Identities = 46/52 (88%), Positives = 50/52 (96%)
Frame = +1
Query: 661 GDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMMILTERGYSFTTTAERE 816
GDGV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLM IL ERGY+F+TTAERE
Sbjct: 156 GDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILMERGYTFSTTAERE 207
Score = 86.6 bits (205), Expect = 4e-18
Identities = 37/41 (90%), Positives = 40/41 (97%)
Frame = +2
Query: 197 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 319
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHG 42
Score = 41.1 bits (92), Expect = 2e-04
Identities = 18/20 (90%), Positives = 19/20 (95%)
Frame = +2
Query: 815 KIVRDIKEXLCYVALDFEQE 874
+IVRDIKE LCYVALDFEQE
Sbjct: 207 EIVRDIKEKLCYVALDFEQE 226
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 129 bits (311), Expect = 6e-31
Identities = 55/107 (51%), Positives = 82/107 (76%)
Frame = +3
Query: 342 KDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 521
KD VGDEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P
Sbjct: 50 KDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPP 109
Query: 522 LNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSG 662
+NP ANREKM + MFE + +YVAIQAVLSLYA G ++G+V+DSG
Sbjct: 110 MNPVANREKMCETMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSG 156
Score = 65.3 bits (152), Expect = 1e-11
Identities = 28/52 (53%), Positives = 37/52 (71%)
Frame = +1
Query: 661 GDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMMILTERGYSFTTTAERE 816
GDGV+H VP+YE L H + RLD+AGRD T YL+ +L +GY+F TA+ E
Sbjct: 156 GDGVTHIVPVYESVVLNHLVGRLDVAGRDATRYLISLLLRKGYAFNRTADFE 207
Score = 48.0 bits (109), Expect = 2e-06
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +2
Query: 203 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 307
E A +V+DNG+G K G+A D+ PR FPSIVGRP
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36
Score = 26.6 bits (56), Expect = 4.6
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +2
Query: 821 VRDIKEXLCYVALDFE 868
VR++KE LCYV+ D E
Sbjct: 209 VREMKEKLCYVSYDLE 224
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 128 bits (310), Expect = 8e-31
Identities = 60/115 (52%), Positives = 81/115 (70%), Gaps = 1/115 (0%)
Frame = +3
Query: 321 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEH 497
VM QKD +VG EAQ+ RG+L ++ PIE GI+ NW DME+IW + + ++ L PEEH
Sbjct: 47 VMPSSIQKDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEH 106
Query: 498 PVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSG 662
P+LLTE PL N+EK+ + +ET N PA+ ++Q VL+LYAS RTTGIVL+ G
Sbjct: 107 PLLLTEPPLANIRNKEKIAEYFYETLNVPALSFSLQPVLALYASARTTGIVLECG 161
Score = 63.3 bits (147), Expect = 4e-11
Identities = 24/52 (46%), Positives = 41/52 (78%)
Frame = +1
Query: 661 GDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMMILTERGYSFTTTAERE 816
GDG++H+VPIY+G+++P AI + ++ GRD+TDYL + L + G+ ++AE+E
Sbjct: 161 GDGLTHSVPIYDGFSIPSAIQQEEIGGRDVTDYLQLQLRKSGHELVSSAEKE 212
Score = 52.4 bits (120), Expect = 8e-08
Identities = 20/34 (58%), Positives = 27/34 (79%)
Frame = +2
Query: 215 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 316
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHE 45
Score = 31.1 bits (67), Expect = 0.22
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +2
Query: 815 KIVRDIKEXLCYVALDFEQE 874
+IVR+IKE CYVA DF E
Sbjct: 212 EIVREIKEKCCYVASDFRSE 231
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 107 bits (257), Expect = 2e-24
Identities = 53/115 (46%), Positives = 71/115 (61%), Gaps = 9/115 (7%)
Frame = +3
Query: 345 DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 521
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H LLTE P
Sbjct: 73 DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPP 132
Query: 522 LNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT--------TGIVLDSG 662
LNP NRE +IMFE+FN +Y+A+QAVL+L AS + TG V+DSG
Sbjct: 133 LNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSG 187
Score = 47.6 bits (108), Expect = 2e-06
Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Frame = +1
Query: 661 GDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMMILTERGY--SFTTTAER 813
GDGV+H +P+ EGY + +I + LAGRD+T ++ +L +R S TAER
Sbjct: 187 GDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEPDSSLKTAER 239
Score = 40.7 bits (91), Expect = 3e-04
Identities = 14/28 (50%), Positives = 23/28 (82%)
Frame = +2
Query: 215 LVVDNGSGMCKAGFAGDDAPRAVFPSIV 298
+++DNG+G K G+AG+DAP VFP+++
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 75.8 bits (178), Expect = 8e-15
Identities = 35/92 (38%), Positives = 52/92 (56%)
Frame = +3
Query: 387 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 566
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 567 ETFNTPAMYVAIQAVLSLYASGRTTGIVLDSG 662
E+ PA Y+A Q + +ASG+ T ++D G
Sbjct: 123 ESLRCPATYLAKQETCAAFASGKGTACLVDIG 154
Score = 40.3 bits (90), Expect = 4e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +2
Query: 200 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 301
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 68.9 bits (161), Expect = 9e-13
Identities = 35/113 (30%), Positives = 66/113 (58%), Gaps = 3/113 (2%)
Frame = +3
Query: 333 MGQKDSYVGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 509
+ + + VG++ + G ++ + P E +++NWD ME++ +TF +L + EHP+ +
Sbjct: 62 LSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICM 120
Query: 510 TEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR--TTGIVLDSG 662
TE NP R MT+++FE +N P++ I + S Y + + ++GIVL+ G
Sbjct: 121 TEPLANPTYVRSTMTELLFELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLG 173
Score = 35.9 bits (79), Expect = 0.008
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +2
Query: 215 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 310
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 67.7 bits (158), Expect = 2e-12
Identities = 34/121 (28%), Positives = 65/121 (53%), Gaps = 2/121 (1%)
Frame = +3
Query: 306 PAIRXVMVGMGQKDSYVGDEAQSKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELR 479
P+ V + ++ YV DE Q I + +K +GI+ +W+ W +L+
Sbjct: 37 PSYYGVRSDVTGRNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQ 96
Query: 480 VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDS 659
V P E+ +++TE NP++ R+++ + FE + PA Y+ QAV +A+ ++T +++D
Sbjct: 97 VNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDI 156
Query: 660 G 662
G
Sbjct: 157 G 157
Score = 36.7 bits (81), Expect = 0.004
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +2
Query: 200 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 301
EE+ +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 50.4 bits (115), Expect = 3e-07
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Frame = +3
Query: 402 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 569
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 570 TFNTPAMYVAIQAVLSLYASGRTTGIVLDSG 662
P +A + ++ LYA G G+V+D G
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILHGLVIDIG 202
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 32.7 bits (71), Expect = 0.071
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +1
Query: 661 GDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMMILTERGYS 792
G +H +P+ + A+ R+D+ G+ LT+YL +++ R Y+
Sbjct: 164 GYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYN 207
Score = 26.2 bits (55), Expect = 6.1
Identities = 9/19 (47%), Positives = 16/19 (84%)
Frame = +2
Query: 818 IVRDIKEXLCYVALDFEQE 874
IV +IKE +CYV+ +F+++
Sbjct: 214 IVNEIKESVCYVSQNFKED 232
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.9 bits (69), Expect = 0.12
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +3
Query: 462 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 605
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 29.9 bits (64), Expect = 0.50
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +3
Query: 744 RPHRLPHDDPHRARLLVHYHRRAGKSFVTSRRXCATSLLTSSRR 875
RP + P DPH + L Y R + K S+ CA +L R+
Sbjct: 263 RPQKPPQIDPHSSSLADEY-RESNKRLQESKESCARFILDCDRK 305
>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 778
Score = 27.9 bits (59), Expect = 2.0
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 643 VSCWTPGDGVSHTVPIYEGYALPHAIL 723
+ W PG G+ H + + E YA P +L
Sbjct: 159 IGFWRPGSGIIHQI-VLENYAFPGGLL 184
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 6.1
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 504 LLTEAPLNPKANREKMTQIMFETFN 578
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPAC29A4.20 |||RNA polymerase II elongator complex, histone
acetyltransferase subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 544
Score = 25.8 bits (54), Expect = 8.1
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Frame = +3
Query: 567 ETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGRRCLPHRAHLRGIRTPPRHPASGLS--- 737
+ N A+ + I L S R T I+ + +R +R P ASG++
Sbjct: 29 KVINLNALKMRISKKHQLSESPRLTDIIAAIPPDAYLKESLMRKLRAKPVRTASGIAVVA 88
Query: 738 -RSRPHRLPH 764
+PHR PH
Sbjct: 89 VMCKPHRCPH 98
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 242 TYRSHCLLPTRQLLRRTS*ISEI 174
TYR H +PT LL T +SEI
Sbjct: 168 TYRDHDAIPTATLLNPTLDVSEI 190
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,728,940
Number of Sequences: 5004
Number of extensions: 81965
Number of successful extensions: 262
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -