Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_M13
         (878 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   2.0  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   3.5  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   6.1  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 20/71 (28%), Positives = 22/71 (30%), Gaps = 5/71 (7%)
 Frame = +1

Query: 625 PPPPPPPXKXKXXXKXGGGG-----XXPPPXXXXXXXXXXXXAPXKXFSPXPXKAPPPXX 789
           PPPPPPP +        G G       PPP             P +  S  P   PPP  
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPP---PPPPR 367

Query: 790 GGGGXLSXDPP 822
                    PP
Sbjct: 368 SAPSTGRQPPP 378


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = -2

Query: 640 GGGGGGXXXPPPPXGGGXXFLG 575
           GG GGG   PPP  GG   F G
Sbjct: 191 GGFGGGSGGPPPGPGGFGGFGG 212



 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -2

Query: 643 GGGGGGGXXXPPPPXGGGXXFLGG 572
           G GG GG    PPP  GG    GG
Sbjct: 189 GFGGFGGGSGGPPPGPGGFGGFGG 212



 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = -2

Query: 649 FXGGGGGGGXXXPPPPXGGGXXFLGGK 569
           F G GGG G   P P   GG    GG+
Sbjct: 190 FGGFGGGSGGPPPGPGGFGGFGGFGGE 216


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +1

Query: 625 PPPPPPPXKXKXXXKXGGGGXXPPP 699
           PPPPPPP          G G  PPP
Sbjct: 761 PPPPPPP------PGVAGAGPPPPP 779


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,256,947
Number of Sequences: 5004
Number of extensions: 12573
Number of successful extensions: 110
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)