Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_M13
(878 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 36 0.027
At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family... 33 0.19
At5g58160.1 68418.m07280 formin homology 2 domain-containing pro... 32 0.44
At1g54215.1 68414.m06180 proline-rich family protein contains pr... 32 0.58
At1g61080.1 68414.m06877 proline-rich family protein 31 0.77
At1g31810.1 68414.m03904 formin homology 2 domain-containing pro... 31 0.77
At5g49280.1 68418.m06099 hydroxyproline-rich glycoprotein family... 30 1.8
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 27 2.2
At5g07770.1 68418.m00889 formin homology 2 domain-containing pro... 30 2.3
At3g06750.1 68416.m00800 hydroxyproline-rich glycoprotein family... 30 2.3
At3g22800.1 68416.m02874 leucine-rich repeat family protein / ex... 29 3.1
At2g32600.1 68415.m03980 hydroxyproline-rich glycoprotein family... 29 3.1
At1g62500.1 68414.m07052 protease inhibitor/seed storage/lipid t... 29 3.1
At1g72600.1 68414.m08395 hydroxyproline-rich glycoprotein family... 24 3.2
At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex... 29 4.1
At5g54650.2 68418.m06805 formin homology 2 domain-containing pro... 28 7.2
At5g54650.1 68418.m06804 formin homology 2 domain-containing pro... 28 7.2
At4g33970.1 68417.m04820 leucine-rich repeat family protein / ex... 28 7.2
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 28 7.2
At3g44340.1 68416.m04764 sec23/sec24 transport family protein co... 28 7.2
At2g33520.1 68415.m04109 expressed protein 28 7.2
At5g19090.1 68418.m02269 heavy-metal-associated domain-containin... 25 7.9
At5g19810.1 68418.m02354 proline-rich extensin-like family prote... 24 8.5
At2g18470.1 68415.m02151 protein kinase family protein contains ... 28 9.5
At2g17770.1 68415.m02058 ABA-responsive element binding protein,... 28 9.5
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex... 28 9.5
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 36.3 bits (80), Expect = 0.027
Identities = 17/53 (32%), Positives = 18/53 (33%)
Frame = +1
Query: 625 PPPPPPPXKXKXXXKXGGGGXXPPPXXXXXXXXXXXXAPXKXFSPXPXKAPPP 783
PPPPPPP PPP P +SP P PPP
Sbjct: 438 PPPPPPPPPPVYSPPPPPPPPPPPPVYSPPPPPPPPPPPPPVYSPPPPSPPPP 490
Score = 35.9 bits (79), Expect = 0.036
Identities = 17/53 (32%), Positives = 18/53 (33%)
Frame = +1
Query: 625 PPPPPPPXKXKXXXKXGGGGXXPPPXXXXXXXXXXXXAPXKXFSPXPXKAPPP 783
PPPPPPP PPP P +SP P PPP
Sbjct: 453 PPPPPPPPPPVYSPPPPPPPPPPPPPVYSPPPPSPPPPPPPVYSPPPPPPPPP 505
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/53 (30%), Positives = 17/53 (32%)
Frame = +1
Query: 625 PPPPPPPXKXKXXXKXGGGGXXPPPXXXXXXXXXXXXAPXKXFSPXPXKAPPP 783
PPPP PP PPP P +SP P PPP
Sbjct: 426 PPPPSPPPPVYSPPPP----PPPPPPVYSPPPPPPPPPPPPVYSPPPPPPPPP 474
Score = 29.1 bits (62), Expect = 4.1
Identities = 19/67 (28%), Positives = 20/67 (29%), Gaps = 1/67 (1%)
Frame = +1
Query: 625 PPPPPPPXK-XKXXXKXGGGGXXPPPXXXXXXXXXXXXAPXKXFSPXPXKAPPPXXGGGG 801
PPPPPPP PPP P SP P + PP
Sbjct: 500 PPPPPPPPPVYSPPPPPVYSSPPPPPSPAPTPVYCTRPPPPPPHSPPPPQFSPPPPEPYY 559
Query: 802 XLSXDPP 822
S PP
Sbjct: 560 YSSPPPP 566
>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
protein Common family members: At4g18570, At4g04980,
At5g61090 [Arabidopsis thaliana]; identical to cDNA
CHUP1 for actin binding protein GI:28071264
Length = 1004
Score = 33.5 bits (73), Expect = 0.19
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +1
Query: 625 PPPPPPPXKXKXXXKXGGGGXXPPP 699
PPPPPPP GGG PPP
Sbjct: 679 PPPPPPPPGGGPPPPPGGGPPPPPP 703
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +1
Query: 625 PPPPPPPXKXKXXXKXGGGGXXPPP 699
PPPPPPP GG PPP
Sbjct: 680 PPPPPPPGGGPPPPPGGGPPPPPPP 704
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -2
Query: 631 GGGXXXPPPPXGGG 590
GGG PPPP GGG
Sbjct: 676 GGGPPPPPPPPGGG 689
>At5g58160.1 68418.m07280 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|Q05858 Formin (Limb deformity protein) {Gallus
gallus}; contains Pfam profile PF02181: Formin Homology
2(FH2) Domain
Length = 1307
Score = 32.3 bits (70), Expect = 0.44
Identities = 20/67 (29%), Positives = 23/67 (34%), Gaps = 1/67 (1%)
Frame = +1
Query: 625 PPPPPPPXKXKXXXKXGGGGXXPPPXXXXXXXXXXXXAPXKXFSPXPXKAPP-PXXGGGG 801
PPPPPPP + K PP +P P P APP P G
Sbjct: 691 PPPPPPPMQHSTVTKV--PPPPPPAPPAPPTPIVHTSSPPPPPPPPPPPAPPTPQSNGIS 748
Query: 802 XLSXDPP 822
+ PP
Sbjct: 749 AMKSSPP 755
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/66 (30%), Positives = 20/66 (30%)
Frame = +1
Query: 625 PPPPPPPXKXKXXXKXGGGGXXPPPXXXXXXXXXXXXAPXKXFSPXPXKAPPPXXGGGGX 804
PPPPPPP G P P SP P APPP G
Sbjct: 730 PPPPPPPPAPPTPQSNGISAMKSSPPAPPAPPRL----PTHSASPPPPTAPPPPPLGQTR 785
Query: 805 LSXDPP 822
PP
Sbjct: 786 APSAPP 791
>At1g54215.1 68414.m06180 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 169
Score = 31.9 bits (69), Expect = 0.58
Identities = 17/53 (32%), Positives = 18/53 (33%)
Frame = +1
Query: 625 PPPPPPPXKXKXXXKXGGGGXXPPPXXXXXXXXXXXXAPXKXFSPXPXKAPPP 783
PPPPPPP G PPP P + P P PPP
Sbjct: 55 PPPPPPPPPPAVNMSVETGIPPPPPPVTDMIKPLSSPPPPQ---PPPRSQPPP 104
>At1g61080.1 68414.m06877 proline-rich family protein
Length = 907
Score = 31.5 bits (68), Expect = 0.77
Identities = 19/66 (28%), Positives = 21/66 (31%)
Frame = +1
Query: 625 PPPPPPPXKXKXXXKXGGGGXXPPPXXXXXXXXXXXXAPXKXFSPXPXKAPPPXXGGGGX 804
PPPPPPP PPP P + +P P P G GG
Sbjct: 536 PPPPPPPP-----GTAAAPPPPPPPPGTQAAPPPPPPPPMQNRAPSPPPMPMGNSGSGGP 590
Query: 805 LSXDPP 822
PP
Sbjct: 591 PPPPPP 596
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/55 (30%), Positives = 17/55 (30%), Gaps = 2/55 (3%)
Frame = +1
Query: 625 PPPPPPPXKXKXXXKXGGGGXXP--PPXXXXXXXXXXXXAPXKXFSPXPXKAPPP 783
PPPPPPP K P PP F P APPP
Sbjct: 456 PPPPPPPPPAVMPLKHFAPPPPPPLPPAVMPLKHFAPPPPTPPAFKPLKGSAPPP 510
Score = 28.7 bits (61), Expect = 5.4
Identities = 19/65 (29%), Positives = 20/65 (30%)
Frame = +1
Query: 628 PPPPPPXKXKXXXKXGGGGXXPPPXXXXXXXXXXXXAPXKXFSPXPXKAPPPXXGGGGXL 807
PPPP P K G PPP P P APPP G
Sbjct: 492 PPPPTPPAFKPLK-----GSAPPPPPPPPLPTTIAAPPPPPPPPRAAVAPPPPPPPPGTA 546
Query: 808 SXDPP 822
+ PP
Sbjct: 547 AAPPP 551
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/71 (25%), Positives = 19/71 (26%), Gaps = 5/71 (7%)
Frame = +1
Query: 625 PPPPPPPXK-----XKXXXKXGGGGXXPPPXXXXXXXXXXXXAPXKXFSPXPXKAPPPXX 789
PPPPPPP + G PPP P PP
Sbjct: 523 PPPPPPPPRAAVAPPPPPPPPGTAAAPPPPPPPPGTQAAPPPPPPPPMQNRAPSPPPMPM 582
Query: 790 GGGGXLSXDPP 822
G G PP
Sbjct: 583 GNSGSGGPPPP 593
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/66 (28%), Positives = 20/66 (30%)
Frame = +1
Query: 625 PPPPPPPXKXKXXXKXGGGGXXPPPXXXXXXXXXXXXAPXKXFSPXPXKAPPPXXGGGGX 804
PPPPPPP PPP P +P P PPP G
Sbjct: 508 PPPPPPP---PLPTTIAAPPPPPPPPRAAVAPPPPPPPPGTAAAPPP---PPPPPGTQAA 561
Query: 805 LSXDPP 822
PP
Sbjct: 562 PPPPPP 567
>At1g31810.1 68414.m03904 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|P48608 Diaphanous protein {Drosophila
melanogaster}; contains Pfam profile PF02181: Formin
Homology 2(FH2) Domain
Length = 1201
Score = 31.5 bits (68), Expect = 0.77
Identities = 21/67 (31%), Positives = 22/67 (32%), Gaps = 1/67 (1%)
Frame = +1
Query: 625 PPPPPPPXKXKXXXKXGGGGXXPPPXXXXXXXXXXXXAPXKXFSPXP-XKAPPPXXGGGG 801
PPPPPPP + G PPP P S P APPP
Sbjct: 659 PPPPPPPTSHSGSIRVGPPSTPPPP---------PPPPPKANISNAPKPPAPPPLPPSST 709
Query: 802 XLSXDPP 822
L PP
Sbjct: 710 RLGAPPP 716
Score = 31.1 bits (67), Expect = 1.0
Identities = 16/53 (30%), Positives = 18/53 (33%)
Frame = +1
Query: 625 PPPPPPPXKXKXXXKXGGGGXXPPPXXXXXXXXXXXXAPXKXFSPXPXKAPPP 783
PPPPPPP PPP +P + P P PPP
Sbjct: 484 PPPPPPPPLFTSTTSFSPSQPPPPPPPPPLFMSTTSFSPSQ---PPPPPPPPP 533
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/66 (27%), Positives = 20/66 (30%)
Frame = +1
Query: 625 PPPPPPPXKXKXXXKXGGGGXXPPPXXXXXXXXXXXXAPXKXFSPXPXKAPPPXXGGGGX 804
PPPPPPP + PPP A P P PPP
Sbjct: 600 PPPPPPPPSSRSIPSPSAPPPPPPPPPSFGSTGNKRQAQ----PPPPPPPPPPTRIPAAK 655
Query: 805 LSXDPP 822
+ PP
Sbjct: 656 CAPPPP 661
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/53 (32%), Positives = 18/53 (33%)
Frame = +1
Query: 625 PPPPPPPXKXKXXXKXGGGGXXPPPXXXXXXXXXXXXAPXKXFSPXPXKAPPP 783
PPPPPPP K PPP P +P P PPP
Sbjct: 641 PPPPPPPPTRIPAAKC---APPPPPPPPTSHSGSIRVGPPS--TPPPPPPPPP 688
Score = 28.7 bits (61), Expect = 5.4
Identities = 20/66 (30%), Positives = 21/66 (31%)
Frame = +1
Query: 625 PPPPPPPXKXKXXXKXGGGGXXPPPXXXXXXXXXXXXAPXKXFSPXPXKAPPPXXGGGGX 804
P PP PP + G PPP P S P PPP G G
Sbjct: 696 PKPPAPPPLPPSSTRLGAPPPPPPP-----PLSKTPAPPPPPLSKTPVPPPPPGLGRG-- 748
Query: 805 LSXDPP 822
S PP
Sbjct: 749 TSSGPP 754
Score = 28.3 bits (60), Expect = 7.2
Identities = 19/69 (27%), Positives = 21/69 (30%), Gaps = 3/69 (4%)
Frame = +1
Query: 625 PPPPPPPXKXKXXXKXGGGGXXPPPXXXXXXXXXXXXAP--XKXFSPXPXKAPPPXXGG- 795
PPPPPPP PPP + +P P PPP G
Sbjct: 572 PPPPPPPPPPLPSRSIPPPLAQPPPPRPPPPPPPPPSSRSIPSPSAPPPPPPPPPSFGST 631
Query: 796 GGXLSXDPP 822
G PP
Sbjct: 632 GNKRQAQPP 640
>At5g49280.1 68418.m06099 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 162
Score = 30.3 bits (65), Expect = 1.8
Identities = 20/66 (30%), Positives = 20/66 (30%)
Frame = +1
Query: 625 PPPPPPPXKXKXXXKXGGGGXXPPPXXXXXXXXXXXXAPXKXFSPXPXKAPPPXXGGGGX 804
PPPP PP PPP P S K PPP GGG
Sbjct: 50 PPPPSPPPPSTPTT-----ACPPPPSPPSSGGGSSYYYPPPSQSGGGSKYPPPYGGGGQG 104
Query: 805 LSXDPP 822
PP
Sbjct: 105 YYYPPP 110
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 27.5 bits (58), Expect(2) = 2.2
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +1
Query: 628 PPPPPPXKXKXXXKXGGGGXXPPP 699
PPPPPP GG PPP
Sbjct: 295 PPPPPPQFLNHQQGFGGPRPPPPP 318
Score = 21.0 bits (42), Expect(2) = 2.2
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = +1
Query: 625 PPPPPP 642
PPPPPP
Sbjct: 257 PPPPPP 262
>At5g07770.1 68418.m00889 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 722
Score = 29.9 bits (64), Expect = 2.3
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +1
Query: 625 PPPPPPPXKXKXXXKXGGGGXXPPP 699
PPPPPPP + G PPP
Sbjct: 24 PPPPPPPMRRSAPSPPPMSGRVPPP 48
>At3g06750.1 68416.m00800 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 147
Score = 29.9 bits (64), Expect = 2.3
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 764 PXKPPPXXXGGGGXYPXTPP 823
P PPP GGGG Y +PP
Sbjct: 51 PPPPPPSSSGGGGSYYYSPP 70
>At3g22800.1 68416.m02874 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycsimilar to extensin-like protein [Lycopersicon
esculentum] gi|5917664|gb|AAD55979; contains
leucine-rich repeats, Pfam:PF00560; contains proline
rich extensin domains, INTERPRO:IPR002965
Length = 470
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/53 (30%), Positives = 16/53 (30%)
Frame = +1
Query: 625 PPPPPPPXKXKXXXKXGGGGXXPPPXXXXXXXXXXXXAPXKXFSPXPXKAPPP 783
PP PPPP PPP P SP P PPP
Sbjct: 376 PPSPPPPPPPPPPPPPPPPPPPPPPPPPPPPPYVYPSPPPPPPSPPPYVYPPP 428
>At2g32600.1 68415.m03980 hydroxyproline-rich glycoprotein family
protein similar to SWISS-PROT:Q15428
Length = 277
Score = 29.5 bits (63), Expect = 3.1
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +1
Query: 625 PPPPPPPXKXKXXXKXGGGGXXPPP 699
PPPPPPP + + G PPP
Sbjct: 231 PPPPPPPHQAQPPPPPPSGLFPPPP 255
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +1
Query: 625 PPPPPPPXKXKXXXKXGGGGXXPPP 699
PPPPPPP G PPP
Sbjct: 230 PPPPPPPPHQAQPPPPPPSGLFPPP 254
>At1g62500.1 68414.m07052 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to auxin
down regulated GB:X69640 GI:296442 from [Glycine max];
contains Pfam profile PF00234: Protease inhibitor/seed
storage/LTP family
Length = 297
Score = 29.5 bits (63), Expect = 3.1
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -2
Query: 640 GGGGGGXXXPPPPXGG 593
GGGGGG PPP GG
Sbjct: 44 GGGGGGGSKPPPHHGG 59
Score = 29.1 bits (62), Expect = 4.1
Identities = 20/64 (31%), Positives = 20/64 (31%)
Frame = +1
Query: 631 PPPPPXKXKXXXKXGGGGXXPPPXXXXXXXXXXXXAPXKXFSPXPXKAPPPXXGGGGXLS 810
P PP K GGGG PPP K PP GGGG
Sbjct: 33 PHPPVPKPPQHGGGGGGGSKPPPHHGGKGGGKPPPHGGK------GGGPPHHGGGGGGGG 86
Query: 811 XDPP 822
PP
Sbjct: 87 KSPP 90
>At1g72600.1 68414.m08395 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 135
Score = 24.2 bits (50), Expect(2) = 3.2
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +1
Query: 628 PPPPPPXKXK 657
PPPPPP K K
Sbjct: 85 PPPPPPKKQK 94
Score = 23.8 bits (49), Expect(2) = 3.2
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +1
Query: 625 PPPPPPP 645
PPPPPPP
Sbjct: 38 PPPPPPP 44
>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 826
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/53 (32%), Positives = 17/53 (32%)
Frame = +1
Query: 625 PPPPPPPXKXKXXXKXGGGGXXPPPXXXXXXXXXXXXAPXKXFSPXPXKAPPP 783
PPPPPPP PPP P SP P PPP
Sbjct: 501 PPPPPPPEYE----------PSPPPPSSEMSPSVRAYPPPPPLSPPPPSPPPP 543
>At5g54650.2 68418.m06805 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 900
Score = 28.3 bits (60), Expect = 7.2
Identities = 23/66 (34%), Positives = 23/66 (34%)
Frame = +1
Query: 625 PPPPPPPXKXKXXXKXGGGGXXPPPXXXXXXXXXXXXAPXKXFSPXPXKAPPPXXGGGGX 804
PPP PPP G GG PPP P S P KAP P G
Sbjct: 389 PPPAPPP---------GSGGPKPPP-----PPGPKGPRPPPPMSLGP-KAPRPPSGPADA 433
Query: 805 LSXDPP 822
L D P
Sbjct: 434 LDDDAP 439
>At5g54650.1 68418.m06804 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 900
Score = 28.3 bits (60), Expect = 7.2
Identities = 23/66 (34%), Positives = 23/66 (34%)
Frame = +1
Query: 625 PPPPPPPXKXKXXXKXGGGGXXPPPXXXXXXXXXXXXAPXKXFSPXPXKAPPPXXGGGGX 804
PPP PPP G GG PPP P S P KAP P G
Sbjct: 389 PPPAPPP---------GSGGPKPPP-----PPGPKGPRPPPPMSLGP-KAPRPPSGPADA 433
Query: 805 LSXDPP 822
L D P
Sbjct: 434 LDDDAP 439
>At4g33970.1 68417.m04820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 699
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/54 (29%), Positives = 18/54 (33%), Gaps = 2/54 (3%)
Frame = +1
Query: 625 PPPP--PPPXKXKXXXKXGGGGXXPPPXXXXXXXXXXXXAPXKXFSPXPXKAPP 780
PPPP PP PPP P FSP P ++PP
Sbjct: 582 PPPPVHSPPPPVHSPPPPAPVHSPPPPVHSPPPPPPVYSPPPPVFSPPPSQSPP 635
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = -1
Query: 698 GGGXXPPPPXFXXXFXFXGGGGGGG 624
G G PPPP + GGGGGGG
Sbjct: 18 GRGRSPPPPP--PRRGYGGGGGGGG 40
>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
PF04815: Sec23/Sec24 helical domain and PF04810:
Sec23/Sec24 zinc finger
Length = 1096
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -1
Query: 821 GGSLDNXPPPPXXGGGA 771
GG L N PPPP G GA
Sbjct: 217 GGPLSNGPPPPMMGPGA 233
>At2g33520.1 68415.m04109 expressed protein
Length = 97
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +1
Query: 625 PPPPPPPXKXKXXXKXGGGGXXPPP 699
PPPP PP + + GG G PP
Sbjct: 27 PPPPYPPTRTRYQDYYGGYGQPHPP 51
>At5g19090.1 68418.m02269 heavy-metal-associated domain-containing
protein contains Pfam heavy-metal-associated domain
PF00403; glycine-rich protein GRP22, rape, PIR:S31415;
isoform contains a non-consensus TG-acceptor splice site
at intron 3
Length = 587
Score = 25.0 bits (52), Expect(2) = 7.9
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -2
Query: 643 GGGGGGGXXXPPPPXGG 593
GGGGGGG P GG
Sbjct: 412 GGGGGGGPQSMSMPMGG 428
Score = 21.4 bits (43), Expect(2) = 7.9
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = -2
Query: 664 PXXXVFXGGGGGGG 623
P GGGGGGG
Sbjct: 404 PGFRPMGGGGGGGG 417
>At5g19810.1 68418.m02354 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 249
Score = 23.8 bits (49), Expect(2) = 8.5
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +1
Query: 625 PPPPPPP 645
PPPPPPP
Sbjct: 206 PPPPPPP 212
Score = 22.6 bits (46), Expect(2) = 8.5
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +1
Query: 628 PPPPPPXK 651
PPPPPP K
Sbjct: 222 PPPPPPSK 229
>At2g18470.1 68415.m02151 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 633
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -2
Query: 643 GGGGGGGXXXPPPP 602
GG GGGG PPPP
Sbjct: 223 GGWGGGGPSPPPPP 236
>At2g17770.1 68415.m02058 ABA-responsive element binding protein,
putative similar to ABA response element binding factor
[Triticum aestivum] gi|21693583|gb|AAM75354
Length = 156
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +1
Query: 625 PPPPPPPXKXKXXXKXGGGGXXPPP 699
PPPPPPP G PPP
Sbjct: 49 PPPPPPPSSSTIVTALYGSLPLPPP 73
>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 727
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/52 (30%), Positives = 17/52 (32%)
Frame = +1
Query: 628 PPPPPPXKXKXXXKXGGGGXXPPPXXXXXXXXXXXXAPXKXFSPXPXKAPPP 783
PPPPPP PPP P P P K+PPP
Sbjct: 616 PPPPPPVHSPPPPVFS----PPPPVHSPPPPVYSPPPPVYSPPPPPVKSPPP 663
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,896,030
Number of Sequences: 28952
Number of extensions: 197960
Number of successful extensions: 3699
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2226
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2067932800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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