Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_M12
         (917 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)             100   2e-21
SB_57150| Best HMM Match : ThiF (HMM E-Value=2.8e-35)                  64   1e-10
SB_28306| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   9e-08
SB_4956| Best HMM Match : ThiF (HMM E-Value=0)                         46   4e-05
SB_22173| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   4e-05
SB_2839| Best HMM Match : No HMM Matches (HMM E-Value=.)               40   0.002
SB_19753| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.56 
SB_22835| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     31   0.99 
SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17)                   31   1.7  
SB_46888| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   3.0  
SB_43375| Best HMM Match : Pneumo_att_G (HMM E-Value=3.6)              29   5.3  

>SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2174

 Score =  100 bits (239), Expect = 2e-21
 Identities = 60/185 (32%), Positives = 95/185 (51%), Gaps = 4/185 (2%)
 Frame = +1

Query: 370 IGVNRAEGSLERARGLNPMVDVTSHTKGVDELPDSFFTEFDVVCATGLKQEQFERINNAC 549
           +G NRAE SL R + LNPMV V++    +    D+F  +FDVV ATG   +    ++  C
Sbjct: 23  LGKNRAEASLARTQALNPMVAVSADKNNITAKADTFLDDFDVVVATGCSSDILANLDERC 82

Query: 550 RDSNKKFICGDVWGTYGYMFSDLVDHEYSEEIVQ--HKATKRGPDDEEKNAR--ETVSIT 717
           R  N KF   DV+G YGYMF+DL    Y EE  +  H A K+  +  +K  +   T + T
Sbjct: 83  RAKNIKFFASDVFGFYGYMFADLGKDRYVEEERKTIHSAEKKEKEPAKKKQKIDSTETKT 142

Query: 718 VKRRAIYVPLQNALSADWNSPEMRSRLRRGDCGYLL*SSVTLQR*IYRNPDPVEKKRXYL 897
           V++   +  L+N+LS  ++   ++S  R     ++L   +  +    R PD +++     
Sbjct: 143 VEKFCEFSSLKNSLSCSFSETRVKSLKRLPSVYFILQVILRFRAKHGRAPDSLQRTSDEK 202

Query: 898 LLKCV 912
            L C+
Sbjct: 203 ELNCL 207


>SB_57150| Best HMM Match : ThiF (HMM E-Value=2.8e-35)
          Length = 1026

 Score = 64.5 bits (150), Expect = 1e-10
 Identities = 34/80 (42%), Positives = 48/80 (60%)
 Frame = +3

Query: 111 QKMVGNNEVELSEAEAEQYDRQIRLWGLDSQKRLRAAKVLIIGLSGLGAEIAKNVILTGV 290
           Q +    + E  + +   Y RQ+ + G ++ K++  + VLI GL GLG EIAKNV+L GV
Sbjct: 42  QSVRDEGQAEKMDIDEGLYSRQLYVLGHEAMKKMAVSNVLISGLRGLGVEIAKNVVLGGV 101

Query: 291 KSVCLLDNEKLKQIDLYSQF 350
           KSV L D   ++  DL SQF
Sbjct: 102 KSVTLHDTGAVELSDLTSQF 121



 Score = 39.5 bits (88), Expect = 0.004
 Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
 Frame = +3

Query: 162 QYDRQIRLWGLDSQKRLRAAKVLIIGLSGLGAEIAKNVILTGVKS-----VCLLDNEKLK 326
           +YD QI ++G + QK+L   K  ++G   +G E  KN  + G+ S     +   D + ++
Sbjct: 324 RYDGQIAVFGSEFQKKLGQQKYFVVGAGAIGCEHLKNFAMMGLGSGEGGHIYTTDMDTIE 383

Query: 327 QIDLYSQFLCPP 362
           + +L  QFL  P
Sbjct: 384 KSNLNRQFLFRP 395


>SB_28306| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 251

 Score = 54.8 bits (126), Expect = 9e-08
 Identities = 29/74 (39%), Positives = 43/74 (58%)
 Frame = +3

Query: 129 NEVELSEAEAEQYDRQIRLWGLDSQKRLRAAKVLIIGLSGLGAEIAKNVILTGVKSVCLL 308
           N+VE+ ++    Y RQ  + G  + +++  A V + G+ GLG EIAKN+ L G+KS+ L 
Sbjct: 3   NKVEIDDS---LYSRQRYMLGDQAMQKMAHASVFLSGVGGLGVEIAKNLTLAGIKSITLH 59

Query: 309 DNEKLKQIDLYSQF 350
           D       DL SQF
Sbjct: 60  DTRAASMADLGSQF 73


>SB_4956| Best HMM Match : ThiF (HMM E-Value=0)
          Length = 213

 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 18/49 (36%), Positives = 34/49 (69%)
 Frame = +3

Query: 207 RLRAAKVLIIGLSGLGAEIAKNVILTGVKSVCLLDNEKLKQIDLYSQFL 353
           ++  +K+L++G  G+G E+ KN++LTG K++ L+D + +   +L  QFL
Sbjct: 20  KVNNSKILVVGAGGIGCELLKNLVLTGFKNIDLIDLDTIDVSNLNRQFL 68


>SB_22173| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 200

 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 18/49 (36%), Positives = 34/49 (69%)
 Frame = +3

Query: 207 RLRAAKVLIIGLSGLGAEIAKNVILTGVKSVCLLDNEKLKQIDLYSQFL 353
           ++  +K+L++G  G+G E+ KN++LTG K++ L+D + +   +L  QFL
Sbjct: 20  KVNNSKILVVGAGGIGCELLKNLVLTGFKNIDLIDLDTIDVSNLNRQFL 68


>SB_2839| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 529

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
 Frame = +3

Query: 141 LSEAEAEQYDRQIRL--WGLDSQKRLRAAKVLIIGLSGLGAEIAKNVILTGVKSVCLLDN 314
           L+ +E  +Y RQ+ L   G+  Q+ L+++ VL++G  GLG   A  +   G+  + L+D 
Sbjct: 52  LTNSEISRYSRQLILPEIGVKGQQSLKSSSVLVVGAGGLGCPAALYLAAAGIGCLGLVDY 111

Query: 315 EKLKQIDLYSQFL 353
           + +   +L+ Q L
Sbjct: 112 DVVDTSNLHRQVL 124


>SB_19753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score = 32.3 bits (70), Expect = 0.56
 Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 8/105 (7%)
 Frame = +1

Query: 493 VVCATGLKQE--QFERI-NNAC--RDSNKK--FICGDVWGTY-GYMFSDLVDHEYSEEIV 648
           VVC    K E  ++  I NNA   RD++ K  F  G++   +  + F + +  E+  E+ 
Sbjct: 208 VVCLCDGKYEVVEYSEISNNAAEKRDADGKLTFRAGNIANHFFTFKFLEAICREHENELP 267

Query: 649 QHKATKRGPDDEEKNARETVSITVKRRAIYVPLQNALSADWNSPE 783
            H A K+ P  ++        + V R   + PL+NA  +   SPE
Sbjct: 268 FHIAKKKIPHVDDSGKINLAVLEVLREDEFSPLKNAPGSAKESPE 312


>SB_22835| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 594

 Score = 31.5 bits (68), Expect = 0.99
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = +1

Query: 442 HTKGVDELPDSFFTEFDVVCATGLKQEQFERINNACRDSNKKFICGDVWGTY 597
           HT+GVDE   SF  E   +C  GL+ +   R +      NK F+C +   T+
Sbjct: 429 HTQGVDE--KSFVCE---ICGKGLRTKSSLRDHRKTHTDNKPFVCEECGKTF 475


>SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17)
          Length = 1249

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 20/69 (28%), Positives = 28/69 (40%)
 Frame = -1

Query: 857  YIHL*SVTELHSK*PQSPRRSLERISGEFQSADKAF*SGTYIARRFTVIETVSRAFFSSS 678
            Y  L  + EL  +    P    +      Q  D     G  + R++  +ET  RA F S 
Sbjct: 904  YQELMELYELSHRIWNKPELGYKEFFAHQQLTDFLESKGFQVTRQYGGLETAFRAEFGSG 963

Query: 677  SGPRLVALC 651
            SGP +  LC
Sbjct: 964  SGPTVAFLC 972


>SB_46888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 626

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 21/69 (30%), Positives = 34/69 (49%)
 Frame = +3

Query: 117 MVGNNEVELSEAEAEQYDRQIRLWGLDSQKRLRAAKVLIIGLSGLGAEIAKNVILTGVKS 296
           M+G     L     +  +  + LW L+ +K    A+V+IIG   LG   A ++   G+K 
Sbjct: 256 MIGQTHRYLRSDWLKVTEACVVLWPLN-KKLKEDAEVVIIGGGCLGVSTAYHLAKRGLKD 314

Query: 297 VCLLDNEKL 323
           V LL+  +L
Sbjct: 315 VVLLEKSEL 323


>SB_43375| Best HMM Match : Pneumo_att_G (HMM E-Value=3.6)
          Length = 774

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +3

Query: 309 DNEKLKQIDLYSQFLCPPXQDRRKSSRGFVGKSSRLESDGRCHKS 443
           +NE L Q    S   CP    + KSS G  G+  RL +   CH+S
Sbjct: 554 ENENLYQPLNNSLDRCPLNVSKPKSSTGPSGEGKRLSNASVCHRS 598


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,256,290
Number of Sequences: 59808
Number of extensions: 526354
Number of successful extensions: 2061
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2056
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2657535823
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)