Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_M11
         (996 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)                 29   5.9  
SB_14625| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.056)          29   7.8  

>SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)
          Length = 768

 Score = 29.1 bits (62), Expect = 5.9
 Identities = 15/34 (44%), Positives = 15/34 (44%)
 Frame = -2

Query: 995 PXGXXGKRXXPRPGXXRGGXAPXHTPXPXGGGXP 894
           P G  G    P P    GG AP   P P GGG P
Sbjct: 668 PGGQAGGAPPPPPPPLPGGAAPP-PPPPIGGGAP 700


>SB_14625| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.056)
          Length = 245

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = +1

Query: 886 PRXGXPPPXGXGVXLGAXPPRXXPGRGXXLFP 981
           P  G PPP G G   G  PP   PG G   +P
Sbjct: 210 PPMGGPPPMG-GPPGGYPPPPPPPGAGDPAYP 240


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,879,757
Number of Sequences: 59808
Number of extensions: 99012
Number of successful extensions: 320
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 317
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2967383049
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)