Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_M09
         (895 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 comple...    31   0.22 
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc...    28   1.6  
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch...    27   4.8  
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch...    26   6.3  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   8.3  

>SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 442

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = -2

Query: 486 DLKKNINRSKLLSIFCITDLLALCFLL*KSIDL 388
           D ++NIN SK  +IFCI +LL L +   K I L
Sbjct: 168 DRQQNINPSKKDAIFCIANLLCLLYFRLKQIRL 200


>SPAC328.05 |||RNA-binding protein involved in export of
           mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = -1

Query: 412 LIIKVDRFTYHKVYDVLILNYYIH*ACGGNRRTGSLIYCPTTAILL 275
           L +++DRF +HK+ D L+ + Y H  C      G+L +  +   LL
Sbjct: 253 LEVRLDRFAHHKIED-LVYHAYPHGPCSDCIYVGNLPWATSDRNLL 297


>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1030

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -2

Query: 636  IKTYRRLFFLKQQLVHLV*IMLVNKMRLGKLQVSSKLHTLQYYSVS 499
            ++T+RRL  L +QL H   ++  N+++   +    KLH    +S S
Sbjct: 982  VRTFRRLDELLKQLEHAAIVLGNNELKEKSVLTEQKLHRDIIFSAS 1027


>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
           subfamily|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 887

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -1

Query: 175 AHRRFINFWYSTNEPFCYTIL*NKKNTTMLYKSLK 71
           + RR + FW + NE     IL +++N     KSLK
Sbjct: 450 SERRGLTFWQTLNEVKNENILLSQRNDKSFLKSLK 484


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 92   CGVFFIL*NCITKRLIGR 145
            CGV  +L NCI++ ++GR
Sbjct: 1667 CGVIDVLPNCISRDMLGR 1684


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,964,337
Number of Sequences: 5004
Number of extensions: 60600
Number of successful extensions: 108
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)