Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_M09
         (895 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49740.1 68418.m06159 ferric reductase-like transmembrane com...    29   3.1  
At5g49730.1 68418.m06158 ferric reductase-like transmembrane com...    29   5.5  
At1g71930.1 68414.m08315 no apical meristem (NAM) family protein...    29   5.5  
At3g47480.1 68416.m05163 calcium-binding EF hand family protein ...    28   9.6  

>At5g49740.1 68418.m06159 ferric reductase-like transmembrane
           component family protein similar to ferric-chelate
           reductase (FRO1) [Pisum sativum] GI:15341529; contains
           Pfam profile PF01794: Ferric reductase like
           transmembrane componenent
          Length = 747

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = -1

Query: 304 IYCPTTAILLFSGCMMLLFHRGHHA*ARIELISRENVGTCGTLAH 170
           + C   ++L+F G +++ +HR  H    +E    + V   G   H
Sbjct: 616 VVCMVASVLIFGGLVVVFWHRWEHKTGEVEANGNDKVDLNGEETH 660


>At5g49730.1 68418.m06158 ferric reductase-like transmembrane
           component family protein similar to ferric-chelate
           reductase (FRO1) [Pisum sativum] GI:15341529; contains
           Pfam profile PF01794: Ferric reductase like
           transmembrane componenent
          Length = 738

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = -1

Query: 298 CPTTAILLFSGCMMLLFHRGHHA*ARIELISRENVGTCGTLAH 170
           C   ++L+F G +++ +HR  H    +E    + V   G   H
Sbjct: 609 CMVASVLIFGGLVVVFWHRWEHKTGEVEANGNDKVDLNGEETH 651


>At1g71930.1 68414.m08315 no apical meristem (NAM) family protein
           similar to NAM GB:CAA63101 from [Petunia x hybrida]
          Length = 324

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = -1

Query: 748 WLVLRCANRNIPNQRQLTY---YHQVYYLQKSTS 656
           W+V R   + IPNQR L Y    +Q+Y+++ S +
Sbjct: 150 WVVCRAFRKPIPNQRPLGYEPWQNQLYHVESSNN 183


>At3g47480.1 68416.m05163 calcium-binding EF hand family protein
           contains INTERPRO:IPR002048 calcium-binding EF-hand
           domain
          Length = 183

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -3

Query: 188 LRDFSPPTLHKFLVFYQ*AFLLYNFIK*KKHHNALQIIK 72
           ++DFS     +F +F+  A++L+  I+  K +  L IIK
Sbjct: 28  IQDFSSSFPFRFHLFFSNAYILFTSIRNNKQNTELPIIK 66


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,463,744
Number of Sequences: 28952
Number of extensions: 275483
Number of successful extensions: 461
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2100696768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)