Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_M08
         (860 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   2.1  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   8.4  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   8.4  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
 Frame = -3

Query: 534 SQFLIT*KLYNRQNGIF-----LFLHKAS*SKRPKPM 439
           S+ +++ +LY+RQNG+      L L K   + +P PM
Sbjct: 275 SKMMVSPRLYDRQNGLVLSRMNLTLAKMEKTSKPLPM 311


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 11/39 (28%), Positives = 16/39 (41%)
 Frame = +1

Query: 94  LRQLARSKLKMVSTS*ISMCLLCSHPGG**CCRNW*ENF 210
           ++ L R     +S   +  C L   P    CCR+W   F
Sbjct: 370 MKPLVRQPEDTMSVDRMQHCELHMQPRKKNCCRSWLSKF 408


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 11/39 (28%), Positives = 16/39 (41%)
 Frame = +1

Query: 94  LRQLARSKLKMVSTS*ISMCLLCSHPGG**CCRNW*ENF 210
           ++ L R     +S   +  C L   P    CCR+W   F
Sbjct: 370 MKPLVRQPEDTMSVDRMQHCELHMQPRKKNCCRSWLSKF 408


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,796
Number of Sequences: 438
Number of extensions: 2313
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)