Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_M07
(1452 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 0.001
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10) 39 0.011
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05) 38 0.020
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013) 38 0.020
SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1) 35 0.19
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.25
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.25
SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33) 33 0.43
SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033) 33 0.43
SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.57
SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26) 32 1.3
SB_26407| Best HMM Match : UQ_con (HMM E-Value=0) 32 1.3
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.0
SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.0
SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31) 29 7.0
SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6) 29 9.3
>SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1212
Score = 41.9 bits (94), Expect = 0.001
Identities = 27/121 (22%), Positives = 33/121 (27%)
Frame = -2
Query: 1130 PXPPAXPXRPEHRGRXXKXPXXRPXRXLXXXXHXXPNPPRCXSRGGQPXPXPRXHXPPPX 951
P PP P +P + + P + QP P PR PPP
Sbjct: 993 PSPPMQPAKPPRQHTQCSIDPVPHLKPPGPTEQPVPPKRKASPPSAQPLPPPRKPSPPPS 1052
Query: 950 XXPXXXXAPAHPAPXXXHAPXRAX*QXIXTXPRPPPAXXXXAAXXPRXXXSXPPTRXTGP 771
P P P P R + P PPP P PP +
Sbjct: 1053 AVPIPPPRKPSPPPSEPAPPPRQPPPPSTSQPVPPPRQPDPIPTNPAHPTEPPPRQPKPT 1112
Query: 770 P 768
P
Sbjct: 1113 P 1113
Score = 29.5 bits (63), Expect = 7.0
Identities = 25/118 (21%), Positives = 31/118 (26%), Gaps = 2/118 (1%)
Frame = -2
Query: 1130 PXPPAXPXRPEHRGRXXKXPXXRPXRXLXXXXHXXPNPP--RCXSRGGQPXPXPRXHXPP 957
P P P P+ + P R P PP + +P P PR PP
Sbjct: 1020 PGPTEQPVPPKRKASPPSAQPLPPPRKPSPPPSAVPIPPPRKPSPPPSEPAPPPR--QPP 1077
Query: 956 PXXXPXXXXAPAHPAPXXXHAPXRAX*QXIXTXPRPPPAXXXXAAXXPRXXXSXPPTR 783
P P P P + P P P P PP +
Sbjct: 1078 PPSTSQPVPPPRQPDPIPTNPAHPTEPPPRQPKPTPAPRPRSWVESQPELHRPPPPIK 1135
>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
Length = 514
Score = 38.7 bits (86), Expect = 0.011
Identities = 34/119 (28%), Positives = 37/119 (31%)
Frame = -2
Query: 1019 PPRCXSRGGQPXPXPRXHXPPPXXXPXXXXAPAHPAPXXXHAPXRAX*QXIXTXPRPPPA 840
PP SRG P P R PPP P AP P AP + RPPP
Sbjct: 287 PPPPPSRGAAPPPPSRGAPPPP---PSRGSAPPPPPARMGTAPPPP--PPSRSSQRPPP- 340
Query: 839 XXXXAAXXPRXXXSXPPTRXTGPPXXGXXXTXXKGVSPXPQTFKKFPX*KXXRXXXPPP 663
A P + PP PP G P P + P PPP
Sbjct: 341 PSRGAPPPPSMGMAPPPVGGAAPPPPPPPPVG--GPPPPPPPIEGRPPSSLGNPPPPPP 397
Score = 29.9 bits (64), Expect = 5.3
Identities = 34/129 (26%), Positives = 37/129 (28%), Gaps = 6/129 (4%)
Frame = -2
Query: 1136 AXPXPPAX--PXRPEHRGRXXKXPXXRPXRXLXXXXHXXPNPPRCXSRGGQPXPXPRXHX 963
A P PP+ P P RG P R P PP +P P R
Sbjct: 295 AAPPPPSRGAPPPPPSRGSAPPPPPARMGTA--------PPPPPPSRSSQRPPPPSRGAP 346
Query: 962 PPP----XXXPXXXXAPAHPAPXXXHAPXRAX*QXIXTXPRPPPAXXXXAAXXPRXXXSX 795
PPP P AP P P P P PPP +
Sbjct: 347 PPPSMGMAPPPVGGAAPPPPPPPPVGGP----------PPPPPPIEGRPPSSLGNPPPPP 396
Query: 794 PPTRXTGPP 768
PP R PP
Sbjct: 397 PPGRGAPPP 405
>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
Length = 480
Score = 37.9 bits (84), Expect = 0.020
Identities = 33/128 (25%), Positives = 36/128 (28%), Gaps = 7/128 (5%)
Frame = -2
Query: 1130 PXPPAXPXRPEHRGRXXKXPXXRPXRXLXXXXHXXPNPPRCXSRGGQPXPXPRXHXPPPX 951
P PP P RG P P R PP SR P P P + PP
Sbjct: 263 PPPPKNAPPPPKRGSSNPPPP--PTRGPPSNSFTTQGPPLPPSRDQAPAPPPPLNATPPP 320
Query: 950 XXPXXXXAPAHPAPXXXH-----APXRAX*QXIXTXPRPPP--AXXXXAAXXPRXXXSXP 792
P P P P P + P PPP A P P
Sbjct: 321 PPPSRDQVPLPPPPLRGQIAPPPPPISKPPTSTRSAPPPPPGRAPQPLGGPPPPPPGRRP 380
Query: 791 PTRXTGPP 768
P+ PP
Sbjct: 381 PSGKINPP 388
Score = 37.9 bits (84), Expect = 0.020
Identities = 33/128 (25%), Positives = 38/128 (29%), Gaps = 8/128 (6%)
Frame = -2
Query: 1022 NPPRCXSRGGQPXPXPRXHXPP--------PXXXPXXXXAPAHPAPXXXHAPXRAX*QXI 867
N P RG P P PP P P APA P P P +
Sbjct: 268 NAPPPPKRGSSNPPPPPTRGPPSNSFTTQGPPLPPSRDQAPAPPPPLNATPPPPPPSRD- 326
Query: 866 XTXPRPPPAXXXXAAXXPRXXXSXPPTRXTGPPXXGXXXTXXKGVSPXPQTFKKFPX*KX 687
P PPP A P P + + PP G P P ++ P K
Sbjct: 327 -QVPLPPPPLRGQIAPPPPPISKPPTSTRSAPPPPPGRAPQPLGGPPPPPPGRRPPSGKI 385
Query: 686 XRXXXPPP 663
PPP
Sbjct: 386 NPPPPPPP 393
Score = 31.9 bits (69), Expect = 1.3
Identities = 36/160 (22%), Positives = 49/160 (30%), Gaps = 1/160 (0%)
Frame = -2
Query: 1139 TAXPXPPAXPXRPEHRGRXXKXPXX-RPXRXLXXXXHXXPNPPRCXSRGGQPXPXPRXHX 963
++ P PP P R RP + P P R + GG+P P P+
Sbjct: 212 SSGPPPPPPGRGPSQRSLAPPPTGSSRPLPAPPPGENRPPPPMRGPTSGGEP-PPPKNAP 270
Query: 962 PPPXXXPXXXXAPAHPAPXXXHAPXRAX*QXIXTXPRPPPAXXXXAAXXPRXXXSXPPTR 783
PPP ++P P P P PP+ A P + PP
Sbjct: 271 PPP------KRGSSNPPPPPTRGPPSN--SFTTQGPPLPPSRDQAPAPPPPLNATPPPPP 322
Query: 782 XTGPPXXGXXXTXXKGVSPXPQTFKKFPX*KXXRXXXPPP 663
+ ++P P K P R PPP
Sbjct: 323 PSRDQVPLPPPPLRGQIAPPPPPISKPP--TSTRSAPPPP 360
Score = 30.3 bits (65), Expect = 4.0
Identities = 31/124 (25%), Positives = 39/124 (31%), Gaps = 1/124 (0%)
Frame = -2
Query: 1025 PNPPRCXSRGGQPXPXP-RXHXPPPXXXPXXXXAPAHPAPXXXHAPXRAX*QXIXTXPRP 849
P PP RGGQ P + PPP P P + P + P P
Sbjct: 147 PPPP---DRGGQLAKKPSQGSFPPPPPM-------GKPPPPSGNKPTFGNSRTSTNGPPP 196
Query: 848 PPAXXXXAAXXPRXXXSXPPTRXTGPPXXGXXXTXXKGVSPXPQTFKKFPX*KXXRXXXP 669
PP +A P S PP PP G + P + + P P
Sbjct: 197 PPHSRHGSAPPPPERSSGPP-----PPPPGRGPSQRSLAPPPTGSSRPLPAPPPGENRPP 251
Query: 668 PPKK 657
PP +
Sbjct: 252 PPMR 255
>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
Length = 392
Score = 37.9 bits (84), Expect = 0.020
Identities = 33/128 (25%), Positives = 36/128 (28%), Gaps = 7/128 (5%)
Frame = -2
Query: 1130 PXPPAXPXRPEHRGRXXKXPXXRPXRXLXXXXHXXPNPPRCXSRGGQPXPXPRXHXPPPX 951
P PP P RG P P R PP SR P P P + PP
Sbjct: 175 PPPPKNAPPPPKRGSSNPPPP--PTRGPPSNSFTTQGPPLPPSRDQAPAPPPPLNATPPP 232
Query: 950 XXPXXXXAPAHPAPXXXH-----APXRAX*QXIXTXPRPPP--AXXXXAAXXPRXXXSXP 792
P P P P P + P PPP A P P
Sbjct: 233 PPPSRDQVPLPPPPLRGQIAPPPPPISKPPTSTRSAPPPPPGRAPQPLGGPPPPPPGRRP 292
Query: 791 PTRXTGPP 768
P+ PP
Sbjct: 293 PSGKINPP 300
Score = 37.9 bits (84), Expect = 0.020
Identities = 33/128 (25%), Positives = 38/128 (29%), Gaps = 8/128 (6%)
Frame = -2
Query: 1022 NPPRCXSRGGQPXPXPRXHXPP--------PXXXPXXXXAPAHPAPXXXHAPXRAX*QXI 867
N P RG P P PP P P APA P P P +
Sbjct: 180 NAPPPPKRGSSNPPPPPTRGPPSNSFTTQGPPLPPSRDQAPAPPPPLNATPPPPPPSRD- 238
Query: 866 XTXPRPPPAXXXXAAXXPRXXXSXPPTRXTGPPXXGXXXTXXKGVSPXPQTFKKFPX*KX 687
P PPP A P P + + PP G P P ++ P K
Sbjct: 239 -QVPLPPPPLRGQIAPPPPPISKPPTSTRSAPPPPPGRAPQPLGGPPPPPPGRRPPSGKI 297
Query: 686 XRXXXPPP 663
PPP
Sbjct: 298 NPPPPPPP 305
Score = 31.9 bits (69), Expect = 1.3
Identities = 36/160 (22%), Positives = 49/160 (30%), Gaps = 1/160 (0%)
Frame = -2
Query: 1139 TAXPXPPAXPXRPEHRGRXXKXPXX-RPXRXLXXXXHXXPNPPRCXSRGGQPXPXPRXHX 963
++ P PP P R RP + P P R + GG+P P P+
Sbjct: 124 SSGPPPPPPGRGPSQRSLAPPPTGSSRPLPAPPPGENRPPPPMRGPTSGGEP-PPPKNAP 182
Query: 962 PPPXXXPXXXXAPAHPAPXXXHAPXRAX*QXIXTXPRPPPAXXXXAAXXPRXXXSXPPTR 783
PPP ++P P P P PP+ A P + PP
Sbjct: 183 PPP------KRGSSNPPPPPTRGPPSN--SFTTQGPPLPPSRDQAPAPPPPLNATPPPPP 234
Query: 782 XTGPPXXGXXXTXXKGVSPXPQTFKKFPX*KXXRXXXPPP 663
+ ++P P K P R PPP
Sbjct: 235 PSRDQVPLPPPPLRGQIAPPPPPISKPP--TSTRSAPPPP 272
Score = 30.3 bits (65), Expect = 4.0
Identities = 31/124 (25%), Positives = 39/124 (31%), Gaps = 1/124 (0%)
Frame = -2
Query: 1025 PNPPRCXSRGGQPXPXP-RXHXPPPXXXPXXXXAPAHPAPXXXHAPXRAX*QXIXTXPRP 849
P PP RGGQ P + PPP P P + P + P P
Sbjct: 59 PPPP---DRGGQLAKKPSQGSFPPPPPM-------GKPPPPSGNKPTFGNSRTSTNGPPP 108
Query: 848 PPAXXXXAAXXPRXXXSXPPTRXTGPPXXGXXXTXXKGVSPXPQTFKKFPX*KXXRXXXP 669
PP +A P S PP PP G + P + + P P
Sbjct: 109 PPHSRHGSAPPPPERSSGPP-----PPPPGRGPSQRSLAPPPTGSSRPLPAPPPGENRPP 163
Query: 668 PPKK 657
PP +
Sbjct: 164 PPMR 167
>SB_2012| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
Length = 305
Score = 34.7 bits (76), Expect = 0.19
Identities = 27/100 (27%), Positives = 30/100 (30%), Gaps = 4/100 (4%)
Frame = -2
Query: 1130 PXPPAXPXRPEHRGRXXKXPXXRPXRXLXXXXHXXPNPPRCXSRGGQPXPXP----RXHX 963
P PP P PE + P P P PP + GG P P P
Sbjct: 108 PTPPPPPRAPETPSQAPSPP---PPPTSPATRAPPPPPPIAPATGGPPPPPPIAPATGGP 164
Query: 962 PPPXXXPXXXXAPAHPAPXXXHAPXRAX*QXIXTXPRPPP 843
PPP PA P +P P PPP
Sbjct: 165 PPPPPIAPAATVPAPAVPLAAASPPPPSGGPPPPPPPPPP 204
>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 34.3 bits (75), Expect = 0.25
Identities = 30/123 (24%), Positives = 32/123 (26%), Gaps = 2/123 (1%)
Frame = -2
Query: 1025 PNPPRCXSRGGQPXPXPRXHXPPPXXXPXXXXAPAHPAPXXXHAPXRAX*QXIXTXP--R 852
P PP P P P PP P P P P +AP P
Sbjct: 103 PPPPPYPPPPNPPYPPPPNAPYPPPPNPPYPPPPNAPYPPSPNAPYPPPPNPPYPPPLYP 162
Query: 851 PPPAXXXXAAXXPRXXXSXPPTRXTGPPXXGXXXTXXKGVSPXPQTFKKFPX*KXXRXXX 672
PPP A P PP PP +P P P
Sbjct: 163 PPPNPPPPNAPYPPPPYPPPPNPPYPPPPNPPYPPPPNAPNPPPPNPPYPPPPNAPNPPY 222
Query: 671 PPP 663
PPP
Sbjct: 223 PPP 225
Score = 29.5 bits (63), Expect = 7.0
Identities = 22/91 (24%), Positives = 24/91 (26%), Gaps = 6/91 (6%)
Frame = -3
Query: 322 PNXXXGXXXXGPGXRGPXTPXXXAAXAXXXTPXXSP------XXPPXPXXTGXPXGPXXX 161
PN P P P + A P P PP P P P
Sbjct: 120 PNAPYPPPPNPPYPPPPNAPYPPSPNAPYPPPPNPPYPPPLYPPPPNPPPPNAPYPPPPY 179
Query: 160 XPXXXAPRXPREXPEHXXXPRXPAXXPXAPP 68
P P P P + P P P PP
Sbjct: 180 PPPPNPPYPPPPNPPYPPPPNAPNPPPPNPP 210
Score = 29.1 bits (62), Expect = 9.3
Identities = 20/74 (27%), Positives = 21/74 (28%)
Frame = -2
Query: 1130 PXPPAXPXRPEHRGRXXKXPXXRPXRXLXXXXHXXPNPPRCXSRGGQPXPXPRXHXPPPX 951
P PP P P P P PNPP P P P PP
Sbjct: 167 PPPPNAPYPPPPYPPPPNPPYPPPPNPPYPPPPNAPNPP----PPNPPYPPPPNAPNPPY 222
Query: 950 XXPXXXXAPAHPAP 909
P P +P P
Sbjct: 223 PPPPNAPNPPYPPP 236
>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 34.3 bits (75), Expect = 0.25
Identities = 23/82 (28%), Positives = 24/82 (29%)
Frame = -2
Query: 1004 SRGGQPXPXPRXHXPPPXXXPXXXXAPAHPAPXXXHAPXRAX*QXIXTXPRPPPAXXXXA 825
S GG P P PP P P P P + P P PPP
Sbjct: 339 SGGGGVNPPPPPTNNPPSPPPPTNNTP--PPPPPTNKPPPPPPPTNGPPPPPPPTNGPPP 396
Query: 824 AXXPRXXXSXPPTRXTGPPXXG 759
P PP GPP G
Sbjct: 397 PPPPTNGPPPPPPPTNGPPSEG 418
>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
Length = 457
Score = 33.5 bits (73), Expect = 0.43
Identities = 21/71 (29%), Positives = 21/71 (29%)
Frame = -2
Query: 1025 PNPPRCXSRGGQPXPXPRXHXPPPXXXPXXXXAPAHPAPXXXHAPXRAX*QXIXTXPRPP 846
P PP S P P P PPP P P P P P P PP
Sbjct: 370 PPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPPPP 429
Query: 845 PAXXXXAAXXP 813
P A P
Sbjct: 430 PPPALRLACAP 440
Score = 32.7 bits (71), Expect = 0.75
Identities = 19/67 (28%), Positives = 19/67 (28%)
Frame = -2
Query: 989 PXPXPRXHXPPPXXXPXXXXAPAHPAPXXXHAPXRAX*QXIXTXPRPPPAXXXXAAXXPR 810
P P P PPP P P P P P P PPP A P
Sbjct: 365 PPPPPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPP 424
Query: 809 XXXSXPP 789
PP
Sbjct: 425 PPPPPPP 431
Score = 31.9 bits (69), Expect = 1.3
Identities = 23/85 (27%), Positives = 24/85 (28%)
Frame = -2
Query: 1025 PNPPRCXSRGGQPXPXPRXHXPPPXXXPXXXXAPAHPAPXXXHAPXRAX*QXIXTXPRPP 846
P PP P P P PPP P P P P P P PP
Sbjct: 368 PPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPP----PPAPPPP 423
Query: 845 PAXXXXAAXXPRXXXSXPPTRXTGP 771
P R + P R T P
Sbjct: 424 PPPPPPPPPALRLACAPPRLRFTSP 448
Score = 29.5 bits (63), Expect = 7.0
Identities = 19/72 (26%), Positives = 20/72 (27%)
Frame = -2
Query: 1004 SRGGQPXPXPRXHXPPPXXXPXXXXAPAHPAPXXXHAPXRAX*QXIXTXPRPPPAXXXXA 825
S G P P PPP P P P+P P P PPP
Sbjct: 358 SAGINMSPPPPPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPP 417
Query: 824 AXXPRXXXSXPP 789
P PP
Sbjct: 418 PAPPPPPPPPPP 429
>SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)
Length = 867
Score = 33.5 bits (73), Expect = 0.43
Identities = 20/71 (28%), Positives = 22/71 (30%)
Frame = -2
Query: 989 PXPXPRXHXPPPXXXPXXXXAPAHPAPXXXHAPXRAX*QXIXTXPRPPPAXXXXAAXXPR 810
P P PR PP P +P P P +P R P PPP P
Sbjct: 205 PPPPPRPPPSPPPPPPPPSPSPPRPPPPPPPSPPR---PLAAKLPEPPPIPNMPPTLPPP 261
Query: 809 XXXSXPPTRXT 777
P R T
Sbjct: 262 TLGYLPTARLT 272
>SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 33.1 bits (72), Expect = 0.57
Identities = 16/45 (35%), Positives = 16/45 (35%)
Frame = -2
Query: 1025 PNPPRCXSRGGQPXPXPRXHXPPPXXXPXXXXAPAHPAPXXXHAP 891
P PP P P PPP P PA PAP AP
Sbjct: 65 PPPPAAAPAAPPPPAAPPAAPPPPPPLPAPPPPPAQPAPQPPPAP 109
>SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26)
Length = 687
Score = 31.9 bits (69), Expect = 1.3
Identities = 24/81 (29%), Positives = 25/81 (30%), Gaps = 1/81 (1%)
Frame = -2
Query: 1124 PPAXPXRPEHR-GRXXKXPXXRPXRXLXXXXHXXPNPPRCXSRGGQPXPXPRXHXPPPXX 948
PP P RP H GR P RP H PP G+P P P
Sbjct: 332 PPHEPGRPPHEPGRPPHEPG-RPPHEPGRPPHEPGRPPH---EPGRPPHEPGRPPYEPGR 387
Query: 947 XPXXXXAPAHPAPXXXHAPXR 885
P P H H P R
Sbjct: 388 PPHEPGRPPHELGRPPHEPGR 408
Score = 31.9 bits (69), Expect = 1.3
Identities = 24/81 (29%), Positives = 25/81 (30%), Gaps = 1/81 (1%)
Frame = -2
Query: 1124 PPAXPXRPEHR-GRXXKXPXXRPXRXLXXXXHXXPNPPRCXSRGGQPXPXPRXHXPPPXX 948
PP P RP H GR P RP H PP G+P P P
Sbjct: 339 PPHEPGRPPHEPGRPPHEPG-RPPHEPGRPPHEPGRPPH---EPGRPPYEPGRPPHEPGR 394
Query: 947 XPXXXXAPAHPAPXXXHAPXR 885
P P H H P R
Sbjct: 395 PPHELGRPPHEPGRPPHEPGR 415
Score = 31.5 bits (68), Expect = 1.7
Identities = 21/80 (26%), Positives = 23/80 (28%)
Frame = -2
Query: 1124 PPAXPXRPEHRGRXXKXPXXRPXRXLXXXXHXXPNPPRCXSRGGQPXPXPRXHXPPPXXX 945
PP P R +H R RP H PP G+P P P
Sbjct: 304 PPFEPDRLQHEARIPPHDQGRPPYEPGRPPHEPGRPPH---EPGRPPHEPGRPPHEPGRP 360
Query: 944 PXXXXAPAHPAPXXXHAPXR 885
P P H H P R
Sbjct: 361 PHEPGRPPHEPGRPPHEPGR 380
>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 1282
Score = 31.9 bits (69), Expect = 1.3
Identities = 24/81 (29%), Positives = 25/81 (30%), Gaps = 1/81 (1%)
Frame = -2
Query: 1124 PPAXPXRPEHR-GRXXKXPXXRPXRXLXXXXHXXPNPPRCXSRGGQPXPXPRXHXPPPXX 948
PP P RP H GR P RP H PP G+P P P
Sbjct: 98 PPHEPGRPPHEPGRPPHEPG-RPPHEPGRPPHEPGRPPH---EPGRPPHEPGRPPYEPGR 153
Query: 947 XPXXXXAPAHPAPXXXHAPXR 885
P P H H P R
Sbjct: 154 PPHEPGRPPHELGRPPHEPGR 174
Score = 31.9 bits (69), Expect = 1.3
Identities = 24/81 (29%), Positives = 25/81 (30%), Gaps = 1/81 (1%)
Frame = -2
Query: 1124 PPAXPXRPEHR-GRXXKXPXXRPXRXLXXXXHXXPNPPRCXSRGGQPXPXPRXHXPPPXX 948
PP P RP H GR P RP H PP G+P P P
Sbjct: 105 PPHEPGRPPHEPGRPPHEPG-RPPHEPGRPPHEPGRPPH---EPGRPPYEPGRPPHEPGR 160
Query: 947 XPXXXXAPAHPAPXXXHAPXR 885
P P H H P R
Sbjct: 161 PPHELGRPPHEPGRPPHEPGR 181
Score = 31.5 bits (68), Expect = 1.7
Identities = 21/80 (26%), Positives = 23/80 (28%)
Frame = -2
Query: 1124 PPAXPXRPEHRGRXXKXPXXRPXRXLXXXXHXXPNPPRCXSRGGQPXPXPRXHXPPPXXX 945
PP P R +H R RP H PP G+P P P
Sbjct: 70 PPFEPDRLQHEARIPPHDQGRPPYEPGRPPHEPGRPPH---EPGRPPHEPGRPPHEPGRP 126
Query: 944 PXXXXAPAHPAPXXXHAPXR 885
P P H H P R
Sbjct: 127 PHEPGRPPHEPGRPPHEPGR 146
>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 30.3 bits (65), Expect = 4.0
Identities = 20/85 (23%), Positives = 24/85 (28%)
Frame = -2
Query: 1022 NPPRCXSRGGQPXPXPRXHXPPPXXXPXXXXAPAHPAPXXXHAPXRAX*QXIXTXPRPPP 843
+P + P P PP P AP P P AP + P PPP
Sbjct: 899 SPSQTPGGSESPSASPPGGSVPPPPPPPGGNAPLPPPPPGGSAPSQPPPPGGNAPPPPPP 958
Query: 842 AXXXXAAXXPRXXXSXPPTRXTGPP 768
PP + PP
Sbjct: 959 PGGSAPPPGGGAPPLPPPPGGSAPP 983
Score = 30.3 bits (65), Expect = 4.0
Identities = 22/79 (27%), Positives = 23/79 (29%)
Frame = -3
Query: 289 PGXRGPXTPXXXAAXAXXXTPXXSPXXPPXPXXTGXPXGPXXXXPXXXAPRXPREXPEHX 110
PG P P A P PP P P G P AP P P
Sbjct: 926 PGGNAPLPPPPPGGSAPSQPPPPGGNAPPPP----PPPGGSAPPPGGGAPPLP-PPPGGS 980
Query: 109 XXPRXPAXXPXAPPRXQWG 53
P P P PP + G
Sbjct: 981 APPPPPPPPPPPPPMRKLG 999
Score = 29.5 bits (63), Expect = 7.0
Identities = 25/86 (29%), Positives = 25/86 (29%), Gaps = 2/86 (2%)
Frame = -2
Query: 1025 PNPPRCXSRGGQPXPXPRXHXP--PPXXXPXXXXAPAHPAPXXXHAPXRAX*QXIXTXPR 852
P PP P P P P PP P AP P P AP P
Sbjct: 921 PPPPPPGGNAPLPPPPPGGSAPSQPP---PPGGNAPPPPPPPGGSAPPPGG----GAPPL 973
Query: 851 PPPAXXXXAAXXPRXXXSXPPTRXTG 774
PPP P PP R G
Sbjct: 974 PPPPGGSAPPPPPPPPPPPPPMRKLG 999
>SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 650
Score = 29.5 bits (63), Expect = 7.0
Identities = 20/75 (26%), Positives = 27/75 (36%)
Frame = -2
Query: 992 QPXPXPRXHXPPPXXXPXXXXAPAHPAPXXXHAPXRAX*QXIXTXPRPPPAXXXXAAXXP 813
QP P PP AP++P + P A + P P+ A P
Sbjct: 183 QPFYPPTPSSYPPTQPSYPPTAPSYPPTPSSYPPIAA------SYPPTAPSYNPTAPSYP 236
Query: 812 RXXXSXPPTRXTGPP 768
S PPT+ + PP
Sbjct: 237 PTPSSYPPTQPSHPP 251
>SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31)
Length = 892
Score = 29.5 bits (63), Expect = 7.0
Identities = 23/88 (26%), Positives = 28/88 (31%), Gaps = 2/88 (2%)
Frame = -2
Query: 1025 PNPPRCXSRGGQPXPXPRXHXPPPXXXPXXXXAPAHPAPXXXHAPX--RAX*QXIXTXPR 852
P+P ++GGQ P PP P P H P H A P+
Sbjct: 780 PSPQGDPNQGGQQ---PGYGAPPTQGGPPQAQPPPHAPPGQAHYQQLGAAAPNQGGYHPQ 836
Query: 851 PPPAXXXXAAXXPRXXXSXPPTRXTGPP 768
PP P+ PP GPP
Sbjct: 837 QPPPPPQGYEPQPQYQPQGPPQYYGGPP 864
>SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6)
Length = 496
Score = 29.1 bits (62), Expect = 9.3
Identities = 21/81 (25%), Positives = 28/81 (34%), Gaps = 3/81 (3%)
Frame = -2
Query: 1124 PPAXPXRPEHRGRXXKXPXX---RPXRXLXXXXHXXPNPPRCXSRGGQPXPXPRXHXPPP 954
PP+ P P R + P P R P+PPR S + P P + P P
Sbjct: 300 PPSPPRYPPSLHRYPQSPLRYPPSPIRYPPLPSRYPPSPPRYPSSHPRYPPSPPRYPPSP 359
Query: 953 XXXPXXXXAPAHPAPXXXHAP 891
P P +P + P
Sbjct: 360 PRYPSSH--PRYPPSPLRYLP 378
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,788,454
Number of Sequences: 59808
Number of extensions: 232328
Number of successful extensions: 879
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4671635246
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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