Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_M07
         (1452 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific tran...    25   7.2  
AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP prot...    25   7.2  

>AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific
            transcription factor FRU-MA protein.
          Length = 960

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 15/36 (41%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
 Frame = +1

Query: 910  GAGCAGAXSXXGXXXGGGXCXR-GXGXGXPPREXQR 1014
            GAG  G  S  G   GGG   R G G G    E Q+
Sbjct: 549  GAGRGGVGSGIGGGGGGGGGGRAGGGVGATGAEKQQ 584


>AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP
           protein.
          Length = 151

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 20/75 (26%), Positives = 21/75 (28%), Gaps = 3/75 (4%)
 Frame = -2

Query: 983 PXPRXHXPPPXXX--PXXXXAPAHP-APXXXHAPXRAX*QXIXTXPRPPPAXXXXAAXXP 813
           P P    PPP     P     P  P AP     P       +    RPPP         P
Sbjct: 72  PKPNISIPPPTMNMPPRPGMIPGMPGAPPLLMGPNGPLPPPMMGM-RPPPMMVPTMGMPP 130

Query: 812 RXXXSXPPTRXTGPP 768
                 PP     PP
Sbjct: 131 MGLGMRPPVMSAAPP 145


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 630,327
Number of Sequences: 2352
Number of extensions: 7194
Number of successful extensions: 16
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 563,979
effective HSP length: 67
effective length of database: 406,395
effective search space used: 169060320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)