Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_M07
(1452 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 39 0.008
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 39 0.010
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 39 0.010
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 33 0.38
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 33 0.67
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 33 0.67
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 33 0.67
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 33 0.67
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 33 0.67
Z68753-3|CAA92988.3| 984|Caenorhabditis elegans Hypothetical pr... 31 2.0
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 30 3.6
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 30 3.6
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 30 3.6
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 30 3.6
Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical pr... 30 4.7
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 30 4.7
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 29 8.2
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 29 8.2
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 29 8.2
AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical ... 29 8.2
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical protein
E02A10.2 protein.
Length = 385
Score = 39.1 bits (87), Expect = 0.008
Identities = 25/80 (31%), Positives = 25/80 (31%)
Frame = +1
Query: 892 GAXXXXGAGCAGAXSXXGXXXGGGXCXRGXGXGXPPREXQRGGLGXXXXSCXXSRXGRXX 1071
G G GC G G GGG C G PP GG G C G
Sbjct: 23 GGGGGGGGGCGGGCGGGGGCGGGGGCGGGCAPPPPPPAC-GGGCGGGGGGCGGGGGGCGG 81
Query: 1072 GXXXXRPRCSGRXGXAGGXG 1131
G C G G GG G
Sbjct: 82 GGG-----CGGGGGGCGGGG 96
Score = 37.1 bits (82), Expect = 0.031
Identities = 32/103 (31%), Positives = 32/103 (31%), Gaps = 7/103 (6%)
Frame = +1
Query: 844 GGGRGXVXIXCXXARXGAXXXXGAGCAGAXSXXGXXXGGGXCXRGXGXG-----XPPREX 1008
GGG G C G G GC G G GGG C G G G PP
Sbjct: 62 GGGCGGGGGGCGGG--GGGCGGGGGCGGGGG--GCGGGGGGCGGGGGCGGGCAPPPPPPA 117
Query: 1009 QRGGLGXXXXSCXXSRXGRXXG--XXXXRPRCSGRXGXAGGXG 1131
GG G C G G C G G GG G
Sbjct: 118 CGGGCGGGGGGCGGGCGGGGGGGCGGGGGGGCGGGGGGCGGGG 160
Score = 30.7 bits (66), Expect = 2.7
Identities = 18/49 (36%), Positives = 18/49 (36%)
Frame = +1
Query: 844 GGGRGXVXIXCXXARXGAXXXXGAGCAGAXSXXGXXXGGGXCXRGXGXG 990
GGG G C G G GC G G GGG C G G G
Sbjct: 134 GGGGGG---GCGGGGGGGCGGGGGGCGGGGG--GCGGGGGGCGGGGGGG 177
Score = 29.1 bits (62), Expect = 8.2
Identities = 19/54 (35%), Positives = 19/54 (35%)
Frame = +1
Query: 844 GGGRGXVXIXCXXARXGAXXXXGAGCAGAXSXXGXXXGGGXCXRGXGXGXPPRE 1005
GGG G C G G GC G GGG C G G G RE
Sbjct: 146 GGGCGGGGGGCGGG-GGGCGGGGGGCGGGGGGGCGGGGGGGC--GGGCGRKKRE 196
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical protein
ZK643.8 protein.
Length = 774
Score = 38.7 bits (86), Expect = 0.010
Identities = 32/98 (32%), Positives = 32/98 (32%), Gaps = 2/98 (2%)
Frame = +1
Query: 844 GGGRGXVXIXCXXARXGAXXXXGAGCA--GAXSXXGXXXGGGXCXRGXGXGXPPREXQRG 1017
GGG G C G G GCA A G GGG C G G PP G
Sbjct: 28 GGGGGGCGGGC-----GGGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGGCAPPPAPC-GG 81
Query: 1018 GLGXXXXSCXXSRXGRXXGXXXXRPRCSGRXGXAGGXG 1131
G G C G G C G G GG G
Sbjct: 82 GCGGGGGGCGGGGGGCGGGGG-----CGGGGGGCGGGG 114
Score = 32.3 bits (70), Expect = 0.88
Identities = 29/99 (29%), Positives = 30/99 (30%)
Frame = +1
Query: 844 GGGRGXVXIXCXXARXGAXXXXGAGCAGAXSXXGXXXGGGXCXRGXGXGXPPREXQRGGL 1023
GGG G C G G GC G S G C G G G GG
Sbjct: 114 GGGCGGGGGGCGGGGGGCGGGGGGGCGGGSSGGCGGGSSGGCGGGGGGGC-------GGG 166
Query: 1024 GXXXXSCXXSRXGRXXGXXXXRPRCSGRXGXAGGXGXAV 1140
G S G C G G +GG G AV
Sbjct: 167 GGGGCGGGSSGGGGYAVAPSGGGGCGG-GGSSGGGGYAV 204
Score = 31.1 bits (67), Expect = 2.0
Identities = 28/96 (29%), Positives = 29/96 (30%)
Frame = +1
Query: 844 GGGRGXVXIXCXXARXGAXXXXGAGCAGAXSXXGXXXGGGXCXRGXGXGXPPREXQRGGL 1023
GGG C G G G G G GGG C G G G GG
Sbjct: 69 GGGCAPPPAPCGGGCGGGGGGCGGGGGGCGGGGGCGGGGGGCG-GGGGGC---GGGGGGC 124
Query: 1024 GXXXXSCXXSRXGRXXGXXXXRPRCSGRXGXAGGXG 1131
G C G G C G G +GG G
Sbjct: 125 GGGGGGCGGGGGGGCGGGSSG--GCGG--GSSGGCG 156
Score = 29.1 bits (62), Expect = 8.2
Identities = 31/108 (28%), Positives = 31/108 (28%), Gaps = 2/108 (1%)
Frame = +1
Query: 814 GXXAAXXXXAGGGRGXVXIXCXXARXGAXXXX--GAGCAGAXSXXGXXXGGGXCXRGXGX 987
G A GGG G C A G GC G G GGG C G G
Sbjct: 46 GGCAPPPAPCGGGCGGGGGGCGGGGGCAPPPAPCGGGCGGGGGGCGG--GGGGCGGGGGC 103
Query: 988 GXPPREXQRGGLGXXXXSCXXSRXGRXXGXXXXRPRCSGRXGXAGGXG 1131
G GG G C G G C G G G G
Sbjct: 104 G-----GGGGGCGGGGGGCGGGGGGCGGGGGG----CGGGGGGGCGGG 142
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical protein
ZK643.8 protein.
Length = 774
Score = 38.7 bits (86), Expect = 0.010
Identities = 32/98 (32%), Positives = 32/98 (32%), Gaps = 2/98 (2%)
Frame = +1
Query: 844 GGGRGXVXIXCXXARXGAXXXXGAGCA--GAXSXXGXXXGGGXCXRGXGXGXPPREXQRG 1017
GGG G C G G GCA A G GGG C G G PP G
Sbjct: 28 GGGGGGCGGGC-----GGGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGGCAPPPAPC-GG 81
Query: 1018 GLGXXXXSCXXSRXGRXXGXXXXRPRCSGRXGXAGGXG 1131
G G C G G C G G GG G
Sbjct: 82 GCGGGGGGCGGGGGGCGGGGG-----CGGGGGGCGGGG 114
Score = 32.3 bits (70), Expect = 0.88
Identities = 29/99 (29%), Positives = 30/99 (30%)
Frame = +1
Query: 844 GGGRGXVXIXCXXARXGAXXXXGAGCAGAXSXXGXXXGGGXCXRGXGXGXPPREXQRGGL 1023
GGG G C G G GC G S G C G G G GG
Sbjct: 114 GGGCGGGGGGCGGGGGGCGGGGGGGCGGGSSGGCGGGSSGGCGGGGGGGC-------GGG 166
Query: 1024 GXXXXSCXXSRXGRXXGXXXXRPRCSGRXGXAGGXGXAV 1140
G S G C G G +GG G AV
Sbjct: 167 GGGGCGGGSSGGGGYAVAPSGGGGCGG-GGSSGGGGYAV 204
Score = 31.1 bits (67), Expect = 2.0
Identities = 28/96 (29%), Positives = 29/96 (30%)
Frame = +1
Query: 844 GGGRGXVXIXCXXARXGAXXXXGAGCAGAXSXXGXXXGGGXCXRGXGXGXPPREXQRGGL 1023
GGG C G G G G G GGG C G G G GG
Sbjct: 69 GGGCAPPPAPCGGGCGGGGGGCGGGGGGCGGGGGCGGGGGGCG-GGGGGC---GGGGGGC 124
Query: 1024 GXXXXSCXXSRXGRXXGXXXXRPRCSGRXGXAGGXG 1131
G C G G C G G +GG G
Sbjct: 125 GGGGGGCGGGGGGGCGGGSSG--GCGG--GSSGGCG 156
Score = 29.1 bits (62), Expect = 8.2
Identities = 31/108 (28%), Positives = 31/108 (28%), Gaps = 2/108 (1%)
Frame = +1
Query: 814 GXXAAXXXXAGGGRGXVXIXCXXARXGAXXXX--GAGCAGAXSXXGXXXGGGXCXRGXGX 987
G A GGG G C A G GC G G GGG C G G
Sbjct: 46 GGCAPPPAPCGGGCGGGGGGCGGGGGCAPPPAPCGGGCGGGGGGCGG--GGGGCGGGGGC 103
Query: 988 GXPPREXQRGGLGXXXXSCXXSRXGRXXGXXXXRPRCSGRXGXAGGXG 1131
G GG G C G G C G G G G
Sbjct: 104 G-----GGGGGCGGGGGGCGGGGGGCGGGGGG----CGGGGGGGCGGG 142
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical protein
R04E5.8a protein.
Length = 997
Score = 33.5 bits (73), Expect = 0.38
Identities = 28/105 (26%), Positives = 30/105 (28%), Gaps = 3/105 (2%)
Frame = -2
Query: 1145 HTTAXPXPPAXPXRPEHRGRXXKXPXXRPXRXLXXXXHXXPNPPRCXSRGGQ---PXPXP 975
H P P A P P + P P P PPR GG P P P
Sbjct: 87 HHLQHPHPYAYPGYPVPGQEGHQVPA--PQHGDHEASPPPPPPPRKSRAGGSSPPPPPPP 144
Query: 974 RXHXPPPXXXPXXXXAPAHPAPXXXHAPXRAX*QXIXTXPRPPPA 840
R PP P P P P PR PP+
Sbjct: 145 RVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRNPPRTPPS 189
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical protein
C08B11.5 protein.
Length = 388
Score = 32.7 bits (71), Expect = 0.67
Identities = 29/122 (23%), Positives = 36/122 (29%)
Frame = -2
Query: 1025 PNPPRCXSRGGQPXPXPRXHXPPPXXXPXXXXAPAHPAPXXXHAPXRAX*QXIXTXPRPP 846
P P ++ G P PPP P P P P P + P PP
Sbjct: 245 PPPLMGMAQSGYQGQYPPVPPPPPSVTPMPPPMP--PTPGMTPRPPPPPSSGMWPPPPPP 302
Query: 845 PAXXXXAAXXPRXXXSXPPTRXTGPPXXGXXXTXXKGVSPXPQTFKKFPX*KXXRXXXPP 666
P PP GPP G G+ P P ++P PP
Sbjct: 303 PPGRTPGPPGMPGMPPPPPPSRFGPPGMG-------GMPPPPPPGMRYP---GGMPPPPP 352
Query: 665 PK 660
P+
Sbjct: 353 PR 354
Score = 29.1 bits (62), Expect = 8.2
Identities = 26/95 (27%), Positives = 28/95 (29%), Gaps = 9/95 (9%)
Frame = -2
Query: 1025 PNPPRCXSRGGQPXPXPRXHXPPPXXXPXXXXAPAHPAPXXXH--APXRAX*QXIXTXP- 855
P PP S G P P P PPP P P P P P P
Sbjct: 285 PRPPPPPSSGMWPPPPP----PPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPG 340
Query: 854 ------RPPPAXXXXAAXXPRXXXSXPPTRXTGPP 768
PPP + P PP+R PP
Sbjct: 341 MRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPP 375
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA binding
protein protein.
Length = 398
Score = 32.7 bits (71), Expect = 0.67
Identities = 29/122 (23%), Positives = 36/122 (29%)
Frame = -2
Query: 1025 PNPPRCXSRGGQPXPXPRXHXPPPXXXPXXXXAPAHPAPXXXHAPXRAX*QXIXTXPRPP 846
P P ++ G P PPP P P P P P + P PP
Sbjct: 255 PPPLMGMAQSGYQGQYPPVPPPPPSVTPMPPPMP--PTPGMTPRPPPPPSSGMWPPPPPP 312
Query: 845 PAXXXXAAXXPRXXXSXPPTRXTGPPXXGXXXTXXKGVSPXPQTFKKFPX*KXXRXXXPP 666
P PP GPP G G+ P P ++P PP
Sbjct: 313 PPGRTPGPPGMPGMPPPPPPSRFGPPGMG-------GMPPPPPPGMRYP---GGMPPPPP 362
Query: 665 PK 660
P+
Sbjct: 363 PR 364
Score = 29.1 bits (62), Expect = 8.2
Identities = 26/95 (27%), Positives = 28/95 (29%), Gaps = 9/95 (9%)
Frame = -2
Query: 1025 PNPPRCXSRGGQPXPXPRXHXPPPXXXPXXXXAPAHPAPXXXH--APXRAX*QXIXTXP- 855
P PP S G P P P PPP P P P P P P
Sbjct: 295 PRPPPPPSSGMWPPPPP----PPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPG 350
Query: 854 ------RPPPAXXXXAAXXPRXXXSXPPTRXTGPP 768
PPP + P PP+R PP
Sbjct: 351 MRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAPP 385
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 32.7 bits (71), Expect = 0.67
Identities = 24/92 (26%), Positives = 26/92 (28%)
Frame = -2
Query: 995 GQPXPXPRXHXPPPXXXPXXXXAPAHPAPXXXHAPXRAX*QXIXTXPRPPPAXXXXAAXX 816
G P P P PP +P P P R PPP +
Sbjct: 235 GSPPPPPPPKGSPPLAGSG---SPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPP 291
Query: 815 PRXXXSXPPTRXTGPPXXGXXXTXXKGVSPXP 720
PR PP G P G G SP P
Sbjct: 292 PRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPP 323
Score = 31.9 bits (69), Expect = 1.2
Identities = 22/85 (25%), Positives = 26/85 (30%)
Frame = -2
Query: 1022 NPPRCXSRGGQPXPXPRXHXPPPXXXPXXXXAPAHPAPXXXHAPXRAX*QXIXTXPRPPP 843
+PP + G P P PPP P A P P +P P PP
Sbjct: 254 SPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSP---------PPPPPPR 304
Query: 842 AXXXXAAXXPRXXXSXPPTRXTGPP 768
+ P PP TG P
Sbjct: 305 GSPPTGSLPPPQAGGSPPPAGTGSP 329
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 32.7 bits (71), Expect = 0.67
Identities = 24/92 (26%), Positives = 26/92 (28%)
Frame = -2
Query: 995 GQPXPXPRXHXPPPXXXPXXXXAPAHPAPXXXHAPXRAX*QXIXTXPRPPPAXXXXAAXX 816
G P P P PP +P P P R PPP +
Sbjct: 256 GSPPPPPPPKGSPPLAGSG---SPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPP 312
Query: 815 PRXXXSXPPTRXTGPPXXGXXXTXXKGVSPXP 720
PR PP G P G G SP P
Sbjct: 313 PRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPP 344
Score = 31.9 bits (69), Expect = 1.2
Identities = 22/85 (25%), Positives = 26/85 (30%)
Frame = -2
Query: 1022 NPPRCXSRGGQPXPXPRXHXPPPXXXPXXXXAPAHPAPXXXHAPXRAX*QXIXTXPRPPP 843
+PP + G P P PPP P A P P +P P PP
Sbjct: 275 SPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSP---------PPPPPPR 325
Query: 842 AXXXXAAXXPRXXXSXPPTRXTGPP 768
+ P PP TG P
Sbjct: 326 GSPPTGSLPPPQAGGSPPPAGTGSP 350
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 32.7 bits (71), Expect = 0.67
Identities = 24/92 (26%), Positives = 26/92 (28%)
Frame = -2
Query: 995 GQPXPXPRXHXPPPXXXPXXXXAPAHPAPXXXHAPXRAX*QXIXTXPRPPPAXXXXAAXX 816
G P P P PP +P P P R PPP +
Sbjct: 241 GSPPPPPPPKGSPPLAGSG---SPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPP 297
Query: 815 PRXXXSXPPTRXTGPPXXGXXXTXXKGVSPXP 720
PR PP G P G G SP P
Sbjct: 298 PRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPP 329
Score = 31.9 bits (69), Expect = 1.2
Identities = 22/85 (25%), Positives = 26/85 (30%)
Frame = -2
Query: 1022 NPPRCXSRGGQPXPXPRXHXPPPXXXPXXXXAPAHPAPXXXHAPXRAX*QXIXTXPRPPP 843
+PP + G P P PPP P A P P +P P PP
Sbjct: 260 SPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSP---------PPPPPPR 310
Query: 842 AXXXXAAXXPRXXXSXPPTRXTGPP 768
+ P PP TG P
Sbjct: 311 GSPPTGSLPPPQAGGSPPPAGTGSP 335
>Z68753-3|CAA92988.3| 984|Caenorhabditis elegans Hypothetical protein
ZC518.2 protein.
Length = 984
Score = 31.1 bits (67), Expect = 2.0
Identities = 36/141 (25%), Positives = 43/141 (30%), Gaps = 5/141 (3%)
Frame = -2
Query: 1124 PPAXPXRPEHR-GRXXKXPXXRPXRXLXXXXHXXPNPPRCXSRGGQPXPXPRXHXPPPXX 948
P A P H G + P P H P PP P P P P
Sbjct: 89 PTAASAFPAHSAGFSHQPPSFSPATQPSMNGHHAPPPPAVSRPPAFPTPPPSVGSAAPSI 148
Query: 947 XP--XXXXAPAHPAPXXXHAPXRAX*QXIXTXPRPPPAXXXXAAXXPRXXXSXPP-TRXT 777
P A A PAP P A P P P+ A P+ + PP ++
Sbjct: 149 QPPIPSALASARPAPFPAAQPPPA--------PTPTPSYQQQMAPRPQAPAAYPPASQQQ 200
Query: 776 G-PPXXGXXXTXXKGVSPXPQ 717
G PP + P PQ
Sbjct: 201 GYPPQPQQNSQYGQPQVPQPQ 221
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical protein
F15B9.4 protein.
Length = 1140
Score = 30.3 bits (65), Expect = 3.6
Identities = 24/101 (23%), Positives = 28/101 (27%)
Frame = -2
Query: 1145 HTTAXPXPPAXPXRPEHRGRXXKXPXXRPXRXLXXXXHXXPNPPRCXSRGGQPXPXPRXH 966
+T A P PP P G P P + P PP P
Sbjct: 484 NTNAPPPPPM----PSINGHAPNPPPPPPLLGIAPMSTNAPPPPPMPGMAPLSTGAPTPP 539
Query: 965 XPPPXXXPXXXXAPAHPAPXXXHAPXRAX*QXIXTXPRPPP 843
PPP P P P A + + P PPP
Sbjct: 540 PPPPVGMANGGPPPPPPLPLDLLKGAVAGLKSVPGGPPPPP 580
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 30.3 bits (65), Expect = 3.6
Identities = 29/121 (23%), Positives = 32/121 (26%)
Frame = -2
Query: 1016 PRCXSRGGQPXPXPRXHXPPPXXXPXXXXAPAHPAPXXXHAPXRAX*QXIXTXPRPPPAX 837
P + G P PPP P P P P P P PPP
Sbjct: 696 PSTSAGGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITG-----GPPPPPPPGG 750
Query: 836 XXXAAXXPRXXXSXPPTRXTGPPXXGXXXTXXKGVSPXPQTFKKFPX*KXXRXXXPPPKK 657
+ P PP PP KG P P F PPKK
Sbjct: 751 LPPISGGP--PPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAPVIPDYLPPKK 808
Query: 656 I 654
+
Sbjct: 809 V 809
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 30.3 bits (65), Expect = 3.6
Identities = 29/121 (23%), Positives = 32/121 (26%)
Frame = -2
Query: 1016 PRCXSRGGQPXPXPRXHXPPPXXXPXXXXAPAHPAPXXXHAPXRAX*QXIXTXPRPPPAX 837
P + G P PPP P P P P P P PPP
Sbjct: 696 PSTSAGGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITG-----GPPPPPPPGG 750
Query: 836 XXXAAXXPRXXXSXPPTRXTGPPXXGXXXTXXKGVSPXPQTFKKFPX*KXXRXXXPPPKK 657
+ P PP PP KG P P F PPKK
Sbjct: 751 LPPISGGP--PPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAPVIPDYLPPKK 808
Query: 656 I 654
+
Sbjct: 809 V 809
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 30.3 bits (65), Expect = 3.6
Identities = 29/121 (23%), Positives = 32/121 (26%)
Frame = -2
Query: 1016 PRCXSRGGQPXPXPRXHXPPPXXXPXXXXAPAHPAPXXXHAPXRAX*QXIXTXPRPPPAX 837
P + G P PPP P P P P P P PPP
Sbjct: 279 PSTSAGGSSALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITG-----GPPPPPPPGG 333
Query: 836 XXXAAXXPRXXXSXPPTRXTGPPXXGXXXTXXKGVSPXPQTFKKFPX*KXXRXXXPPPKK 657
+ P PP PP KG P P F PPKK
Sbjct: 334 LPPISGGP--PPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAPVIPDYLPPKK 391
Query: 656 I 654
+
Sbjct: 392 V 392
>Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical protein
Y49E10.10 protein.
Length = 425
Score = 29.9 bits (64), Expect = 4.7
Identities = 26/102 (25%), Positives = 27/102 (26%), Gaps = 1/102 (0%)
Frame = -2
Query: 1001 RGGQPXPXPRXHXPPPXXXPXXXXAPAHPAPXXXHAPXRAX*QXIXTXP-RPPPAXXXXA 825
RGG P P P PA P P T P P P
Sbjct: 107 RGGDPAGKPNPPAGDPSKTKPQGGDPAKPKPQTGDPYATNSTVKPATAPVTPEPTVKNTT 166
Query: 824 AXXPRXXXSXPPTRXTGPPXXGXXXTXXKGVSPXPQTFKKFP 699
A P PPT PP +P P T K P
Sbjct: 167 AAEPTTEAPPPPTTKAPPPPTTKAPPPPTTKAPPPPTTKAPP 208
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 29.9 bits (64), Expect = 4.7
Identities = 29/109 (26%), Positives = 35/109 (32%)
Frame = -2
Query: 1175 PAXSXXXXXXHTTAXPXPPAXPXRPEHRGRXXKXPXXRPXRXLXXXXHXXPNPPRCXSRG 996
PA + P PP P P+H P P H P P +
Sbjct: 80 PAPPLASYPQNAVPVPAPPPAPY-PQHA-----VPAPAPP-PAPYPQHAVPAPAPYQQQP 132
Query: 995 GQPXPXPRXHXPPPXXXPXXXXAPAHPAPXXXHAPXRAX*QXIXTXPRP 849
P P P + PPP P AP H A AP A + P+P
Sbjct: 133 PPPPPPPH-YPPPPPHYPPPPPAP-HSAYIDHSAPRPAYIEHSAPPPQP 179
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 29.1 bits (62), Expect = 8.2
Identities = 24/80 (30%), Positives = 25/80 (31%), Gaps = 6/80 (7%)
Frame = -3
Query: 289 PGXRGPXTPXXXAAXAXXXTPXXSPXXP--PXPXXTGXPXGPXXXXPXXXAPRXPREXPE 116
PG GP P A A P P P P G P P P P P P
Sbjct: 182 PGSPGPRGPPGPAGEAGAPGPAGEPGTPAISEPLTPGAPGEPGDSGP--PGPPGPPGAPG 239
Query: 115 HXXXPRXP----AXXPXAPP 68
+ P P A P PP
Sbjct: 240 NDGPPGPPGPKGAPGPDGPP 259
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 29.1 bits (62), Expect = 8.2
Identities = 24/80 (30%), Positives = 25/80 (31%), Gaps = 6/80 (7%)
Frame = -3
Query: 289 PGXRGPXTPXXXAAXAXXXTPXXSPXXP--PXPXXTGXPXGPXXXXPXXXAPRXPREXPE 116
PG GP P A A P P P P G P P P P P P
Sbjct: 177 PGSPGPRGPPGPAGEAGAPGPAGEPGTPAISEPLTPGAPGEPGDSGP--PGPPGPPGAPG 234
Query: 115 HXXXPRXP----AXXPXAPP 68
+ P P A P PP
Sbjct: 235 NDGPPGPPGPKGAPGPDGPP 254
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 29.1 bits (62), Expect = 8.2
Identities = 24/80 (30%), Positives = 25/80 (31%), Gaps = 6/80 (7%)
Frame = -3
Query: 289 PGXRGPXTPXXXAAXAXXXTPXXSPXXP--PXPXXTGXPXGPXXXXPXXXAPRXPREXPE 116
PG GP P A A P P P P G P P P P P P
Sbjct: 177 PGSPGPRGPPGPAGEAGAPGPAGEPGTPAISEPLTPGAPGEPGDSGP--PGPPGPPGAPG 234
Query: 115 HXXXPRXP----AXXPXAPP 68
+ P P A P PP
Sbjct: 235 NDGPPGPPGPKGAPGPDGPP 254
>AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical
protein ZC123.1 protein.
Length = 730
Score = 29.1 bits (62), Expect = 8.2
Identities = 20/69 (28%), Positives = 22/69 (31%)
Frame = -2
Query: 1130 PXPPAXPXRPEHRGRXXKXPXXRPXRXLXXXXHXXPNPPRCXSRGGQPXPXPRXHXPPPX 951
P P +P RGR + PNPPR P P P PPP
Sbjct: 91 PATPNCCPKPCCRGRRPEYEEYEDEEGNPGGVPAPPNPPRTCC----PPPTPAAPPPPPP 146
Query: 950 XXPXXXXAP 924
P AP
Sbjct: 147 PPPPAPEAP 155
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,181,856
Number of Sequences: 27780
Number of extensions: 204910
Number of successful extensions: 1028
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 4152264522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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