Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_M06
(923 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0653 - 4856197-4856268,4857464-4857506,4857607-4857661,485... 102 3e-22
06_03_0869 + 25548853-25549074,25549191-25549251,25549912-255500... 99 2e-21
09_04_0694 - 19529084-19529201,19529464-19529544,19529637-195301... 30 3.0
08_01_0601 - 5268520-5271112,5272448-5272950 29 3.9
10_08_0352 + 17091637-17091945,17092049-17096617,17096975-170971... 29 5.2
03_05_1097 + 30393336-30393578,30393661-30393780,30393859-303940... 29 5.2
03_01_0526 + 3956909-3957071,3957262-3957317,3957398-3957462,395... 29 5.2
09_02_0229 - 6062825-6064899,6064943-6065432,6065479-6065956,606... 29 6.9
>02_01_0653 -
4856197-4856268,4857464-4857506,4857607-4857661,
4857867-4857900,4857989-4858083,4858720-4858780,
4858858-4858932
Length = 144
Score = 102 bits (245), Expect = 3e-22
Identities = 41/56 (73%), Positives = 50/56 (89%)
Frame = +1
Query: 475 EGPDDMPAHVKACFLGSSLTIPITDGKLNLGTWQGVWLCEHRNHAGSRKIVVTLSG 642
EGPDDMPAH+K+ G +LTIPITDG LN+GTWQG+WLCEHR++A SRKIV+TL+G
Sbjct: 88 EGPDDMPAHIKSSMFGCALTIPITDGHLNMGTWQGIWLCEHRDNASSRKIVITLNG 143
Score = 82.2 bits (194), Expect = 5e-16
Identities = 38/89 (42%), Positives = 60/89 (67%), Gaps = 3/89 (3%)
Frame = +3
Query: 222 IGSAWFQRKLNLRPQHRGVHLVTEEILKQVP-ELSQFAVGLCHIQIMHTSASLALNESWD 398
+ + W Q+ + + Q RG HL+T +IL+++ +LS F GL H+ + HTSASL +NE++D
Sbjct: 1 MAAKWAQKTIVIPAQRRGCHLITPKILREIEGDLSGFKCGLAHLFLQHTSASLTINENYD 60
Query: 399 PNVRDDMEMMLNKIVPEG--LPYRHSWRG 479
+V+ D E LN+IVPEG P++H+ G
Sbjct: 61 SDVQADTETFLNRIVPEGRSAPWKHTLEG 89
>06_03_0869 +
25548853-25549074,25549191-25549251,25549912-25550006,
25550094-25550127,25550551-25550605,25550687-25550729,
25551064-25551135
Length = 193
Score = 99 bits (238), Expect = 2e-21
Identities = 39/56 (69%), Positives = 50/56 (89%)
Frame = +1
Query: 475 EGPDDMPAHVKACFLGSSLTIPITDGKLNLGTWQGVWLCEHRNHAGSRKIVVTLSG 642
EGPDDMPAH+K+ G +LTIPITDG+LN+GTWQG+WLCEHR++A R+IV+TL+G
Sbjct: 137 EGPDDMPAHIKSSMFGCALTIPITDGRLNMGTWQGIWLCEHRDYATPRQIVITLNG 192
Score = 81.4 bits (192), Expect = 9e-16
Identities = 38/85 (44%), Positives = 58/85 (68%), Gaps = 3/85 (3%)
Frame = +3
Query: 234 WFQRKLNLRPQHRGVHLVTEEILKQV-PELSQFAVGLCHIQIMHTSASLALNESWDPNVR 410
W QR + + PQ RG HL+T +I+ + +LS+F G+ H+ + HTSASL +NE++D +V+
Sbjct: 54 WAQRTVVIPPQRRGCHLITPKIVNGIRDDLSEFKCGMAHLFLQHTSASLTINENYDSDVQ 113
Query: 411 DDMEMMLNKIVPEG--LPYRHSWRG 479
D E L++IVPEG P+RH+ G
Sbjct: 114 FDTETFLSRIVPEGPSAPWRHTIEG 138
>09_04_0694 -
19529084-19529201,19529464-19529544,19529637-19530136,
19530444-19530540,19530633-19530775,19531187-19531528,
19531810-19532031,19532292-19532330,19532386-19532601,
19533101-19533196,19533416-19533481,19533777-19533821,
19533903-19533965,19534274-19534344,19534599-19534699,
19534896-19534972,19535856-19535900
Length = 773
Score = 29.9 bits (64), Expect = 3.0
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -2
Query: 394 QLSFRARLAEVCIICI*QRPTANCDSSGTCFRISSVTRCTPR 269
Q SF + L + + ++PT+ D S CF SS+ R +PR
Sbjct: 591 QTSFNSALTLGKALLLQEQPTSPSDGSSRCFDRSSLERISPR 632
>08_01_0601 - 5268520-5271112,5272448-5272950
Length = 1031
Score = 29.5 bits (63), Expect = 3.9
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Frame = +1
Query: 484 DDMPAHVKACFL---GSSLTIPITDGKL 558
DD+P H+K CFL G + PI GKL
Sbjct: 486 DDLPTHLKPCFLYFAGFTAQTPICAGKL 513
>10_08_0352 +
17091637-17091945,17092049-17096617,17096975-17097187,
17097266-17097494,17097857-17097981
Length = 1814
Score = 29.1 bits (62), Expect = 5.2
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +1
Query: 484 DDMPAHVKACFLGSSLTIP--ITDGKLNLGTWQGVWLCEHRNHAGSRKI 624
DDMP H+K CFL SL + D + + W + R AG ++
Sbjct: 423 DDMPCHLKQCFLYCSLFLSDFAVDRRSLVQQWIAEGFVQIRGDAGVEEV 471
>03_05_1097 +
30393336-30393578,30393661-30393780,30393859-30394017,
30394184-30394225,30394336-30394508,30394600-30394705,
30394795-30394824
Length = 290
Score = 29.1 bits (62), Expect = 5.2
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = -1
Query: 434 VEHHFHVIPHIRIPTLI*SKTRRSVHYLYMTEADRELRQFRHLF 303
VE H PHI +P+ + TR S HYLY + ++R R + H F
Sbjct: 43 VEGHHVQKPHI-VPSCKVNFTRAS-HYLYRSLSERTTRHWLHRF 84
>03_01_0526 +
3956909-3957071,3957262-3957317,3957398-3957462,
3957560-3958006,3958102-3958227,3958328-3958511,
3958788-3958943
Length = 398
Score = 29.1 bits (62), Expect = 5.2
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = +2
Query: 203 LEPRNSDWIRVVSKEAEFEATAPGRAPRHRG--DPETGAGTV 322
+EP++ DW RVVS+ E AP DPE G V
Sbjct: 4 MEPKDIDWSRVVSRYVRDETYEGIEAPHWADLTDPEAGVAAV 45
>09_02_0229 -
6062825-6064899,6064943-6065432,6065479-6065956,
6066333-6066382,6068917-6069172,6069358-6069503
Length = 1164
Score = 28.7 bits (61), Expect = 6.9
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +1
Query: 484 DDMPAHVKACFLGSSLTIPITDGKLNLGTWQGVWLCEHRNHAGSRKIVVTLS 639
+D+P H+K CFL SL++ D L + + +W+ E H + I L+
Sbjct: 535 EDLPPHLKQCFL--SLSLFPADYDLAIWDLRALWVAEGFLHPKEQLIAEELA 584
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,107,058
Number of Sequences: 37544
Number of extensions: 429217
Number of successful extensions: 1159
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1157
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2635816500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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