Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_M06
         (923 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40492| Best HMM Match : PROCN (HMM E-Value=0)                       29   4.0  
SB_3829| Best HMM Match : HLH (HMM E-Value=4.4e-12)                    29   5.3  
SB_53170| Best HMM Match : DUF705 (HMM E-Value=5.1)                    29   7.0  
SB_57823| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  
SB_56077| Best HMM Match : Exo_endo_phos (HMM E-Value=0.55)            28   9.3  
SB_22732| Best HMM Match : RVT_1 (HMM E-Value=2.2e-23)                 28   9.3  

>SB_40492| Best HMM Match : PROCN (HMM E-Value=0)
          Length = 1784

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 21/64 (32%), Positives = 34/64 (53%)
 Frame = -1

Query: 647 RQPDSVTTIFRLPA*FLCSHSQTPCHVPKLSFPSVMGIVSEEPRKHAFTWAGISSGPSPR 468
           RQP  V T +R+   +L +      H+P   +PSV+ I +E+P   AF +  + +  S R
Sbjct: 290 RQP--VRTEYRIAFPYLYNSLPYKVHLPWYHYPSVVYIKTEDPDLPAFYFDPLINPISHR 347

Query: 467 VAVR 456
            AV+
Sbjct: 348 HAVK 351


>SB_3829| Best HMM Match : HLH (HMM E-Value=4.4e-12)
          Length = 1650

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = -1

Query: 275 APVLWPQIQLPLKPRGSNLNSSVRGHV*FYKSLQDDRENKNGSTQHHLD*PFTQAKPQL 99
           A +L  Q Q P+     N N    G      S +D+     G++  H+D  F+Q+KP +
Sbjct: 697 ASILTIQHQAPVNLPNGNSNQQSLGQA--QTSNEDNSRGSEGTSNDHMDGLFSQSKPTM 753


>SB_53170| Best HMM Match : DUF705 (HMM E-Value=5.1)
          Length = 257

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 191 IKHGLEPRNSDWIRVVSKEAEFEA 262
           +K   EP+N    R+VSK+A FEA
Sbjct: 82  VKGRKEPKNQQLFRIVSKDAPFEA 105


>SB_57823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 614

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -1

Query: 587 SQTPCHVPKLSFPSVMGIVSEEPRKHAFTWAGISSGPSPRVAVR*TLWH 441
           S+ PC VP L+ P+V  +V++       TW  + +G +  V     +W+
Sbjct: 37  SRVPCRVPDLAPPNVR-VVNQSSTSLLVTWDPLPAGHTRGVLAGYRVWY 84


>SB_56077| Best HMM Match : Exo_endo_phos (HMM E-Value=0.55)
          Length = 368

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = -1

Query: 326 LRQFRHLFQDLLCDEVHAPVLWPQIQLPLKPRGSNLNSS 210
           L Q+  LF D+L   VHAP+   +I+ PLKP   N   S
Sbjct: 311 LDQWYKLFNDILT--VHAPIKEHRIKRPLKPDWFNAEIS 347


>SB_22732| Best HMM Match : RVT_1 (HMM E-Value=2.2e-23)
          Length = 457

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = -1

Query: 326 LRQFRHLFQDLLCDEVHAPVLWPQIQLPLKPRGSNLNSS 210
           L Q+  LF D+L   VHAP+   +I+ PLKP   N   S
Sbjct: 22  LDQWYKLFNDILT--VHAPIKEHRIKRPLKPDWFNAEIS 58


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,797,447
Number of Sequences: 59808
Number of extensions: 489777
Number of successful extensions: 1064
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1062
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2681370225
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)