Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_M06
         (923 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical...    29   3.6  
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ...    29   3.6  
U39647-6|AAM51529.1|  505|Caenorhabditis elegans Twik family of ...    29   4.7  
AF083649-1|AAC32860.1|  381|Caenorhabditis elegans putative pota...    29   4.7  
U85766-1|AAD00574.1|  216|Caenorhabditis elegans EGL-17 protein.       28   8.2  
AC006635-3|AAK68384.1|  216|Caenorhabditis elegans Egg laying de...    28   8.2  

>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
            protein Y64G10A.7 protein.
          Length = 1651

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 328  NCDSSGTCFRISSVTRCTPRCCGL 257
            NC++ GTC R++   RC P   G+
Sbjct: 1387 NCENGGTCDRLTGQCRCLPGFTGM 1410


>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
            protein Y64G10A.7 protein.
          Length = 1651

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 328  NCDSSGTCFRISSVTRCTPRCCGL 257
            NC++ GTC R++   RC P   G+
Sbjct: 1387 NCENGGTCDRLTGQCRCLPGFTGM 1410


>U39647-6|AAM51529.1|  505|Caenorhabditis elegans Twik family of
           potassium channelsprotein 17, isoform a protein.
          Length = 505

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 26/98 (26%), Positives = 37/98 (37%)
 Frame = -1

Query: 617 RLPA*FLCSHSQTPCHVPKLSFPSVMGIVSEEPRKHAFTWAGISSGPSPRVAVR*TLWHY 438
           RLP   L   S  P H    S    +G V  E         GI   P   + VR  +W  
Sbjct: 19  RLPFSDLAFVSSLPEHYLPQSLKENIGRVKWEEYNRR---EGIEDVPEQPIVVRVPIWRR 75

Query: 437 LVEHHFHVIPHIRIPTLI*SKTRRSVHYLYMTEADREL 324
           +++    ++PH+ +  L+ S            EAD EL
Sbjct: 76  ILKLLKILLPHVGLNVLLLSYIAMGATVFIWLEADHEL 113


>AF083649-1|AAC32860.1|  381|Caenorhabditis elegans putative
           potassium channel subunitn2P17m3 protein.
          Length = 381

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 26/98 (26%), Positives = 37/98 (37%)
 Frame = -1

Query: 617 RLPA*FLCSHSQTPCHVPKLSFPSVMGIVSEEPRKHAFTWAGISSGPSPRVAVR*TLWHY 438
           RLP   L   S  P H    S    +G V  E         GI   P   + VR  +W  
Sbjct: 19  RLPFSDLAFVSSLPEHYLPQSLKENIGRVKWEEYNRR---EGIEDVPEQPIVVRVPIWRR 75

Query: 437 LVEHHFHVIPHIRIPTLI*SKTRRSVHYLYMTEADREL 324
           +++    ++PH+ +  L+ S            EAD EL
Sbjct: 76  ILKLLKILLPHVGLNVLLLSYIAMGATVFIWLEADHEL 113


>U85766-1|AAD00574.1|  216|Caenorhabditis elegans EGL-17 protein.
          Length = 216

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +2

Query: 161 FRGRPVAIYKIKHGLEPRNSDWIRVVSKEAEFEATAPGRAPRHRGDP 301
           F GR      + + L+PR  DWI++V   AE E +     P+ +  P
Sbjct: 133 FNGRGRFQNPLSYHLKPRCFDWIKLVRYVAESEKSVCSTPPKPKLSP 179


>AC006635-3|AAK68384.1|  216|Caenorhabditis elegans Egg laying
           defective protein 17 protein.
          Length = 216

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +2

Query: 161 FRGRPVAIYKIKHGLEPRNSDWIRVVSKEAEFEATAPGRAPRHRGDP 301
           F GR      + + L+PR  DWI++V   AE E +     P+ +  P
Sbjct: 133 FNGRGRFQNPLSYHLKPRCFDWIKLVRYVAESEKSVCSTPPKPKLSP 179


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,917,777
Number of Sequences: 27780
Number of extensions: 352279
Number of successful extensions: 868
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2370744068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)