Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_M06
         (923 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g21065.1 68414.m02635 expressed protein                             94   1e-19

>At1g21065.1 68414.m02635 expressed protein
          Length = 217

 Score = 94.3 bits (224), Expect = 1e-19
 Identities = 44/88 (50%), Positives = 61/88 (69%), Gaps = 3/88 (3%)
 Frame = +3

Query: 225 GSAWFQRKLNLRPQHRGVHLVTEEILKQVPE-LSQFAVGLCHIQIMHTSASLALNESWDP 401
           G+ W Q+ + L P  RG HL+T +ILK++ E LS F  GL H+ + HTSASL +NE++DP
Sbjct: 75  GAKWAQKTITLPPLRRGCHLITPKILKEIREDLSDFNCGLAHVFLQHTSASLTINENYDP 134

Query: 402 NVRDDMEMMLNKIVPEG--LPYRHSWRG 479
           +V+ D E  LN+IVPEG   P+RH+  G
Sbjct: 135 DVQADTETFLNRIVPEGNSAPWRHTMEG 162



 Score = 93.5 bits (222), Expect = 2e-19
 Identities = 37/56 (66%), Positives = 47/56 (83%)
 Frame = +1

Query: 475 EGPDDMPAHVKACFLGSSLTIPITDGKLNLGTWQGVWLCEHRNHAGSRKIVVTLSG 642
           EGPDDMPAH+K+   G  LTIPIT GKL++GTWQG+WLCEHR+   +R++VVTL+G
Sbjct: 161 EGPDDMPAHIKSSMFGCQLTIPITKGKLSMGTWQGIWLCEHRDAPTARRVVVTLNG 216


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,940,955
Number of Sequences: 28952
Number of extensions: 324258
Number of successful extensions: 775
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2197951248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)