Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_M04
         (895 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g42750.1 68418.m05206 expressed protein                             29   5.5  
At1g70900.1 68414.m08181 expressed protein                             28   7.3  

>At5g42750.1 68418.m05206 expressed protein
          Length = 337

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +3

Query: 39  LKILVSLPVARRTRTVKQLPSLTL*LYIKIRTIMSTNENNSEVAVDKVGDENKGD 203
           L +L  LPV+ RT T       TL +   +    + N NN+E A+  +  E K D
Sbjct: 96  LHLLSHLPVSPRTSTGSYNDGFTLPVKDILPDQPTNNNNNTENAITNISTEAKDD 150


>At1g70900.1 68414.m08181 expressed protein
          Length = 244

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 210 FWRHLYSHRRPCQRPLHCYFH 148
           F   ++  R PC RP+HC  H
Sbjct: 50  FIERVWQQRPPCLRPIHCSIH 70


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,491,227
Number of Sequences: 28952
Number of extensions: 178836
Number of successful extensions: 384
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 384
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2100696768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)