Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_M03
         (1079 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g29240.1 68417.m04182 leucine-rich repeat family protein / ex...    29   5.3  
At3g06130.1 68416.m00704 heavy-metal-associated domain-containin...    29   7.0  
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex...    28   9.3  

>At4g29240.1 68417.m04182 leucine-rich repeat family protein /
           extensin family protein contains Pfam PF00560: Leucine
           Rich Repeat domains; similar to leucine-rich
           repeat/extensin 1 (GI:13809918) [Arabidopsis thaliana]
          Length = 415

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = -3

Query: 564 GVGGXXXVGXGXGGGGXG 511
           GVGG   VG G GGGG G
Sbjct: 31  GVGGGVGVGIGGGGGGGG 48


>At3g06130.1 68416.m00704 heavy-metal-associated domain-containing
           protein contains Pfam heavy metal associated domain
           PF00403
          Length = 473

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +2

Query: 608 PHXXPTPHPXXXPXXRTXPPP 670
           PH  P PHP   P     PPP
Sbjct: 432 PHQYPNPHPYPYPYPYPYPPP 452


>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 760

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 14/51 (27%), Positives = 15/51 (29%)
 Frame = +2

Query: 518 PPPPXPXPTXXXXXXXXXXXXXXXXXXQHXPHXXPTPHPXXXPXXRTXPPP 670
           PPPP P P                      P   P P P   P   + PPP
Sbjct: 440 PPPPPPPPVYSPPPPPPPPPPPPVYSPPPPPPPPPPPPPVYSPPPPSPPPP 490


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,195,192
Number of Sequences: 28952
Number of extensions: 135435
Number of successful extensions: 751
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,070,560
effective HSP length: 82
effective length of database: 9,696,496
effective search space used: 2685929392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)