Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_M02
         (866 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    30   0.49 
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    26   8.0  

>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 29.9 bits (64), Expect = 0.49
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -2

Query: 829 SHLFNFTLSFILVDIKLDILDKARHYE 749
           S LFN+ LS I  D+  D+ D+AR Y+
Sbjct: 525 SLLFNYVLSLIHFDMSYDLRDRARFYK 551


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1402

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +2

Query: 341  HALGIYTHLSFAFVIHNTVK*NTSRNI*NNFFXKCICYLYNL 466
            +A+G +  LS   ++H     N    + NNFF K + + + L
Sbjct: 1043 YAIGQFRFLSKLVLVHGRWDYNRVAEMVNNFFYKSVVWTFTL 1084


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,891,008
Number of Sequences: 5004
Number of extensions: 53202
Number of successful extensions: 128
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)