Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_M02
         (866 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    24   1.6  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    24   1.6  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    24   1.6  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    24   1.6  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    24   1.6  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    24   1.6  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    23   3.6  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   8.4  

>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 482 NFFNYSNYKDNKY 444
           N +NYSNY +N Y
Sbjct: 87  NNYNYSNYNNNNY 99


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 482 NFFNYSNYKDNKY 444
           N +NYSNY +N Y
Sbjct: 87  NNYNYSNYNNNNY 99


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 482 NFFNYSNYKDNKY 444
           N +NYSNY +N Y
Sbjct: 87  NNYNYSNYNNNNY 99


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 482 NFFNYSNYKDNKY 444
           N +NYSNY +N Y
Sbjct: 87  NNYNYSNYNNNNY 99


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 482 NFFNYSNYKDNKY 444
           N +NYSNY +N Y
Sbjct: 87  NNYNYSNYNNNNY 99


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 482 NFFNYSNYKDNKY 444
           N +NYSNY +N Y
Sbjct: 87  NNYNYSNYNNNNY 99


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 482 NFFNYSNYKDNKY 444
           N+ NY+NY +N Y
Sbjct: 326 NYNNYNNYNNNNY 338


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 69  KLKTNKRIRPTGDTSKRK 122
           KLK NK++R + + SK K
Sbjct: 258 KLKPNKKVRISNEMSKVK 275


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,740
Number of Sequences: 438
Number of extensions: 4012
Number of successful extensions: 25
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28038087
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)