Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_M01
         (1394 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   1.2  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    28   3.5  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 47/212 (22%), Positives = 53/212 (25%), Gaps = 12/212 (5%)
 Frame = +2

Query: 521  PPXLXXRXILXXPPLXXXXXXXSXXPXTXAXSXXXSXYPSAPFTATP------RXXXPXP 682
            PP L    IL  P            P +   S   S  P+AP    P          P P
Sbjct: 970  PPPLPVSNILSSPT----SEPPKDHPPSAPLSKPVSTSPAAPLARVPPVPKLSSKAPPVP 1025

Query: 683  XPXRQYPLXFVP---PRCPTXXPXDPAXXPRSXXXXLLRCLSXPQXXSPRXXXPXXXXXT 853
             P    P   VP   P  P      P     S        +  P    P    P      
Sbjct: 1026 LPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPV 1085

Query: 854  SXCXXHXXLXSXAVXTXPVXTPLXXXPPAPXP---XXXXXXXTXTXPXXXAXXAPPXAXL 1024
                    +   +V   PV  P    PP P P              P      APP    
Sbjct: 1086 PAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKP 1145

Query: 1025 XXAXPXAXDQPPPSXXHPXXXRVXXPPXLPXP 1120
              A P     P PS   P        P +P P
Sbjct: 1146 SVAAPPV---PAPSGAPPVPKPSVAAPPVPAP 1174


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 857

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 34/165 (20%), Positives = 42/165 (25%), Gaps = 2/165 (1%)
 Frame = +2

Query: 644  PFTATPRXXXPXPXPXRQYPLXFVPPRCPTXXPXDPAXXPRSXXXXLLRCLSXPQXXSPR 823
            PFT  P        P     L   PP      P  P   P        +  + P   +P 
Sbjct: 460  PFTNNPNPISAPEKPTSGESLSLNPP------PAMPKVFPERDISSASQKAAQPSVITPS 513

Query: 824  XXXPXXXXXTSXCXX-HXXLXSXAVXTXPVXTPLXXXPPAPX-PXXXXXXXTXTXPXXXA 997
               P            H    +      P        P  P  P           P   +
Sbjct: 514  VPQPPAAPVVPEAPSVHQPPAAPVAPEVPSAPQRPAAPVVPEAPSVPQRPAVPVVPEALS 573

Query: 998  XXAPPXAXLXXAXPXAXDQPPPSXXHPXXXRVXXPPXLPXPPXXP 1132
               PP A +    P +  QPP +   P    V  PP  P  P  P
Sbjct: 574  VPQPPVAPVAPEVP-SVPQPPVAPVVPEAPSVPQPPVAPVAPEVP 617


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,840,698
Number of Sequences: 5004
Number of extensions: 14457
Number of successful extensions: 31
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 773012242
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)