Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_M01
(1394 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.006
SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33) 33 0.54
SB_1800| Best HMM Match : LEA_4 (HMM E-Value=7.4) 32 1.2
SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.7
SB_52222| Best HMM Match : SAPS (HMM E-Value=2.1e-37) 31 2.9
SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033) 30 3.8
SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.7
SB_26646| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 8.8
SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6) 29 8.8
>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 39.5 bits (88), Expect = 0.006
Identities = 22/76 (28%), Positives = 25/76 (32%)
Frame = +2
Query: 905 PVXTPLXXXPPAPXPXXXXXXXTXTXPXXXAXXAPPXAXLXXAXPXAXDQPPPSXXHPXX 1084
P PL PP P P P PP P A + PPP+ +P
Sbjct: 155 PYPPPLYPPPPNPPPPNAPYPPPPYPPPPNPPYPPPPNPPYPPPPNAPNPPPPNPPYPPP 214
Query: 1085 XRVXXPPXLPXPPXXP 1132
PP P PP P
Sbjct: 215 PNAPNPP-YPPPPNAP 229
Score = 33.5 bits (73), Expect = 0.41
Identities = 39/167 (23%), Positives = 46/167 (27%)
Frame = +2
Query: 632 YPSAPFTATPRXXXPXPXPXRQYPLXFVPPRCPTXXPXDPAXXPRSXXXXLLRCLSXPQX 811
YP P+ P P P YP PP P P +P P + P
Sbjct: 94 YPPPPYPPYPPPPPYPPPPNPPYP---PPPNAPYPPPPNPPYPPPP---------NAPYP 141
Query: 812 XSPRXXXPXXXXXTSXCXXHXXLXSXAVXTXPVXTPLXXXPPAPXPXXXXXXXTXTXPXX 991
SP P + + P P PP P P P
Sbjct: 142 PSPNAPYPPPPNPPYPPPLYPPPPNPPPPNAPYPPP--PYPPPPNPPYPPPPNPPYPPPP 199
Query: 992 XAXXAPPXAXLXXAXPXAXDQPPPSXXHPXXXRVXXPPXLPXPPXXP 1132
A PP P PPP+ +P PP P PP P
Sbjct: 200 NAPNPPP--------PNPPYPPPPNAPNPP---YPPPPNAPNPPYPP 235
Score = 31.1 bits (67), Expect = 2.2
Identities = 20/76 (26%), Positives = 22/76 (28%)
Frame = +2
Query: 905 PVXTPLXXXPPAPXPXXXXXXXTXTXPXXXAXXAPPXAXLXXAXPXAXDQPPPSXXHPXX 1084
P P P P P P A PP P A P P+ +P
Sbjct: 92 PPYPPPPYPPYPPPPPYPPPPNPPYPPPPNAPYPPPPNPPYPPPPNAPYPPSPNAPYPPP 151
Query: 1085 XRVXXPPXLPXPPXXP 1132
PP L PP P
Sbjct: 152 PNPPYPPPLYPPPPNP 167
>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
Length = 457
Score = 33.1 bits (72), Expect = 0.54
Identities = 18/67 (26%), Positives = 18/67 (26%)
Frame = +2
Query: 932 PPAPXPXXXXXXXTXTXPXXXAXXAPPXAXLXXAXPXAXDQPPPSXXHPXXXRVXXPPXL 1111
PP P P P PP P PPP P PP
Sbjct: 366 PPPPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPP 425
Query: 1112 PXPPXXP 1132
P PP P
Sbjct: 426 PPPPPPP 432
Score = 32.3 bits (70), Expect = 0.95
Identities = 18/67 (26%), Positives = 18/67 (26%)
Frame = +2
Query: 932 PPAPXPXXXXXXXTXTXPXXXAXXAPPXAXLXXAXPXAXDQPPPSXXHPXXXRVXXPPXL 1111
PP P P P PP P PPP P PP
Sbjct: 365 PPPPPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPP 424
Query: 1112 PXPPXXP 1132
P PP P
Sbjct: 425 PPPPPPP 431
Score = 29.9 bits (64), Expect = 5.0
Identities = 17/65 (26%), Positives = 19/65 (29%)
Frame = +1
Query: 892 GXNXXGXHPPXXPXSXXXPXXXXPHXHXNXPXXXRXXRPPSRXTXPXXXXRXXPTPPLXX 1071
G N PP P P P + P + PP P P PP
Sbjct: 360 GINMSPPPPPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPA 419
Query: 1072 TPPXP 1086
PP P
Sbjct: 420 PPPPP 424
Score = 29.1 bits (62), Expect = 8.8
Identities = 17/69 (24%), Positives = 20/69 (28%)
Frame = +2
Query: 905 PVXTPLXXXPPAPXPXXXXXXXTXTXPXXXAXXAPPXAXLXXAXPXAXDQPPPSXXHPXX 1084
P P PP+P P + P PP P PPP+ P
Sbjct: 366 PPPPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPP 425
Query: 1085 XRVXXPPXL 1111
PP L
Sbjct: 426 PPPPPPPAL 434
>SB_1800| Best HMM Match : LEA_4 (HMM E-Value=7.4)
Length = 186
Score = 31.9 bits (69), Expect = 1.2
Identities = 25/87 (28%), Positives = 26/87 (29%)
Frame = -3
Query: 1164 GHGKRVKXXXXGXXGGXGXXGGXXTRXXXGCXXEGGGWSXAXGXAXXSXAXGGAXXAXXX 985
GHG GG G GG T G GGG + G A GG A
Sbjct: 38 GHGGATGGHGGATGGGGGATGGGATGGGGGATGGGGGATGGHG-----GATGGGGGATGD 92
Query: 984 GXVXVXMXXXXXGXGAGGXXXRGVXTG 904
G G G G G TG
Sbjct: 93 GGGATGGGGGATGGGGGATGGHGGATG 119
>SB_55818| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 31.5 bits (68), Expect = 1.7
Identities = 20/64 (31%), Positives = 20/64 (31%)
Frame = +2
Query: 932 PPAPXPXXXXXXXTXTXPXXXAXXAPPXAXLXXAXPXAXDQPPPSXXHPXXXRVXXPPXL 1111
PP P P P A APP A P A PPP P P
Sbjct: 50 PPPPPPSPPAAAPAAPPPPAAAPAAPPP---PAAPPAAPPPPPPLPAPPPPPAQPAPQPP 106
Query: 1112 PXPP 1123
P PP
Sbjct: 107 PAPP 110
>SB_52222| Best HMM Match : SAPS (HMM E-Value=2.1e-37)
Length = 1063
Score = 30.7 bits (66), Expect = 2.9
Identities = 19/67 (28%), Positives = 21/67 (31%)
Frame = -3
Query: 1131 GXXGGXGXXGGXXTRXXXGCXXEGGGWSXAXGXAXXSXAXGGAXXAXXXGXVXVXMXXXX 952
G GG G GG G +GGG+ G A GG G
Sbjct: 810 GDGGGGGGGGGGGGGGDGGGYGDGGGFGDGGGYADGDGGGGGGGGGGGGGGGGGGGGGGG 869
Query: 951 XGXGAGG 931
G G GG
Sbjct: 870 GGGGGGG 876
>SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)
Length = 867
Score = 30.3 bits (65), Expect = 3.8
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Frame = +2
Query: 1007 PPXAXLXXAXPXAXDQPPPSXXHPXXXRVXXPPXLP-XPPXXP 1132
PP + P PPPS P ++ PP +P PP P
Sbjct: 217 PPPPPPSPSPPRPPPPPPPSPPRPLAAKLPEPPPIPNMPPTLP 259
>SB_20869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1212
Score = 29.5 bits (63), Expect = 6.7
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Frame = +2
Query: 653 ATPRXXXPXPXPXRQYP----LXFVPPRCPTXXPXDPAXXPR 766
A+P P P P + P + PPR P+ P +PA PR
Sbjct: 1033 ASPPSAQPLPPPRKPSPPPSAVPIPPPRKPSPPPSEPAPPPR 1074
>SB_26646| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 152
Score = 29.1 bits (62), Expect = 8.8
Identities = 21/74 (28%), Positives = 22/74 (29%), Gaps = 2/74 (2%)
Frame = -3
Query: 1131 GXXGGXGXXGGXXTRXXXGCXXEGGG--WSXAXGXAXXSXAXGGAXXAXXXGXVXVXMXX 958
G GG G GG G GGG G A GGA G
Sbjct: 38 GVGGGGGNGGGAGNGVGAGGCGCGGGNDGGNGGGGAGNGGGGGGAGNGGAAGAAGAGAGG 97
Query: 957 XXXGXGAGGXXXRG 916
G G+GG G
Sbjct: 98 NVGGGGSGGVGGNG 111
>SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6)
Length = 496
Score = 29.1 bits (62), Expect = 8.8
Identities = 16/45 (35%), Positives = 18/45 (40%)
Frame = +2
Query: 632 YPSAPFTATPRXXXPXPXPXRQYPLXFVPPRCPTXXPXDPAXXPR 766
YP +P P P P R P PPR P+ P P PR
Sbjct: 313 YPQSPLRYPPSPIRYPPLPSRYPP---SPPRYPSSHPRYPPSPPR 354
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,760,924
Number of Sequences: 59808
Number of extensions: 159679
Number of successful extensions: 595
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 16,821,457
effective HSP length: 85
effective length of database: 11,737,777
effective search space used: 4448617483
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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