Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_M01
         (1394 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    31   1.5  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    31   1.5  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    31   1.5  
Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical pr...    29   7.8  
Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical pr...    29   7.8  

>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
            isoform b protein.
          Length = 518

 Score = 31.5 bits (68), Expect = 1.5
 Identities = 19/76 (25%), Positives = 22/76 (28%)
 Frame = +2

Query: 905  PVXTPLXXXPPAPXPXXXXXXXTXTXPXXXAXXAPPXAXLXXAXPXAXDQPPPSXXHPXX 1084
            P  +P    PP   P       +   P       PP        P     PPP+   P  
Sbjct: 233  PAGSPPPPPPPKGSPPLAGSG-SPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPP 291

Query: 1085 XRVXXPPXLPXPPXXP 1132
             R   PP  P P   P
Sbjct: 292  PRAGSPPPPPPPRGSP 307


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
            isoform c protein.
          Length = 539

 Score = 31.5 bits (68), Expect = 1.5
 Identities = 19/76 (25%), Positives = 22/76 (28%)
 Frame = +2

Query: 905  PVXTPLXXXPPAPXPXXXXXXXTXTXPXXXAXXAPPXAXLXXAXPXAXDQPPPSXXHPXX 1084
            P  +P    PP   P       +   P       PP        P     PPP+   P  
Sbjct: 254  PAGSPPPPPPPKGSPPLAGSG-SPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPP 312

Query: 1085 XRVXXPPXLPXPPXXP 1132
             R   PP  P P   P
Sbjct: 313  PRAGSPPPPPPPRGSP 328


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
            isoform a protein.
          Length = 524

 Score = 31.5 bits (68), Expect = 1.5
 Identities = 19/76 (25%), Positives = 22/76 (28%)
 Frame = +2

Query: 905  PVXTPLXXXPPAPXPXXXXXXXTXTXPXXXAXXAPPXAXLXXAXPXAXDQPPPSXXHPXX 1084
            P  +P    PP   P       +   P       PP        P     PPP+   P  
Sbjct: 239  PAGSPPPPPPPKGSPPLAGSG-SPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPP 297

Query: 1085 XRVXXPPXLPXPPXXP 1132
             R   PP  P P   P
Sbjct: 298  PRAGSPPPPPPPRGSP 313


>Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical protein
            ZK643.8 protein.
          Length = 774

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 15/50 (30%), Positives = 16/50 (32%)
 Frame = -3

Query: 1131 GXXGGXGXXGGXXTRXXXGCXXEGGGWSXAXGXAXXSXAXGGAXXAXXXG 982
            G  GG G  GG       GC   GGG     G      + GG       G
Sbjct: 105  GGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGSSGGCGGGSSGG 154


>Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical protein
            ZK643.8 protein.
          Length = 774

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 15/50 (30%), Positives = 16/50 (32%)
 Frame = -3

Query: 1131 GXXGGXGXXGGXXTRXXXGCXXEGGGWSXAXGXAXXSXAXGGAXXAXXXG 982
            G  GG G  GG       GC   GGG     G      + GG       G
Sbjct: 105  GGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGSSGGCGGGSSGG 154


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,290,931
Number of Sequences: 27780
Number of extensions: 121507
Number of successful extensions: 423
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3954537640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)