Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_L24
         (919 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    29   0.067
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     24   1.9  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   7.7  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 28.7 bits (61), Expect = 0.067
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = -2

Query: 309 IRLYCYSTIY--LIIFLLHFRIFVCNIYSFK*HSIGWCIECILFCMKCLFPMWLW 151
           I L C    Y   I+F +H  + VC  Y +  H + +C   I+F M  LF + ++
Sbjct: 233 IILLCIYYFYYAFILFTVHLLLLVCIYYFYYMHLL-FCCAFIIFTMHLLFLLCIY 286


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +1

Query: 43  DFELSS*I*TVVEWTAE 93
           D++LSS + T+++WT E
Sbjct: 209 DYDLSSHVITILDWTKE 225


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 7/25 (28%), Positives = 10/25 (40%)
 Frame = -2

Query: 537 SCCWRSWPQCQRSCSPSWHKTRWSP 463
           S  W +W    R C  +W+     P
Sbjct: 472 SLLWHTWMPVMRICVSAWNPKDCDP 496


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,038
Number of Sequences: 336
Number of extensions: 5439
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25651384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)