Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_L24
         (919 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce...    32   0.099
SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|...    31   0.30 
SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase Agn1|Schizo...    29   1.2  
SPAC11D3.18c |||nicotinic acid plasma membrane transporter |Schi...    28   1.6  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   4.9  

>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 32.3 bits (70), Expect = 0.099
 Identities = 21/110 (19%), Positives = 44/110 (40%), Gaps = 1/110 (0%)
 Frame = +3

Query: 585 LSSFFWGYVLLQVPAGMLAGRFGGKFLIFAAMACTGGRQPCLCLXPAVKGDWIAVCACPI 764
           L+ F+ GY++ +VP+ ++      +  +       G    C  +     G+  +  A   
Sbjct: 133 LALFYVGYIIFEVPSNLMMAFIEPRIWVSRIQLTIGVVGACHAVLGTKHGNAQSYVALRF 192

Query: 765 VMGLTQGLLYPSLHGILGRWAPANERXXLGTXVYAGAQL-GXIIELMTSG 911
            +G+ +  L+P L   + RW             Y  AQ+    + L+++G
Sbjct: 193 FLGVAESGLWPGLAYYMSRWYRGKHLGKRIGWYYTAAQIAAAAVSLVSAG 242


>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 552

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 21/91 (23%), Positives = 39/91 (42%)
 Frame = +3

Query: 594 FFWGYVLLQVPAGMLAGRFGGKFLIFAAMACTGGRQPCLCLXPAVKGDWIAVCACPIVMG 773
           F+ G+V+ Q+P  ML  RF     + A+ A        +        ++  + A    +G
Sbjct: 133 FYVGFVIGQIPGHMLLQRFPVSKFVAASTAL----WTIIIFLHCAAYNFSGLMALRFFLG 188

Query: 774 LTQGLLYPSLHGILGRWAPANERXXLGTXVY 866
           L +  L P++   +G + P +E+  L    Y
Sbjct: 189 LVESSLLPTMEATIGMFFPHSEQALLQPFFY 219


>SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase
           Agn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +3

Query: 441 LIIFLMFLGTTVSYATRVSMSVGIVAMTSNNSYDYPVFDWDRSTQDTI 584
           L++FL+ L + +   T     V +      N+Y Y V +W+   QD I
Sbjct: 3   LVLFLVLLFSALINLTNADKMV-VAHFIVGNTYPYTVSNWEEDIQDAI 49


>SPAC11D3.18c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
 Frame = +3

Query: 585 LSSFFWGYVLLQVPAGMLAGRF-GGKFLIFAAMACTGGRQPCLCLXPAVKGDWIAVCACP 761
           +S F+  Y+L++ P+ +L  R    + L F + A +        L       +  + A  
Sbjct: 102 VSIFYVLYILVETPSVVLVKRIKASRMLAFISFAWS-----MTVLFSGFMSSYGGLIATR 156

Query: 762 IVMGLTQGLLYPSLHGILGRWAPANERXXLGTXVYAGAQL 881
           +++GL +G L+P+L+  L       E+    + ++A A L
Sbjct: 157 LILGLLEGCLFPALNLYLTTHYTRKEQCQRLSYLFASAGL 196


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 437 AFNYLPHVPGDHRVLCHEG 493
           AFN+L HVP  +  L HEG
Sbjct: 24  AFNHLHHVPQHNGSLAHEG 42


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,817,521
Number of Sequences: 5004
Number of extensions: 83432
Number of successful extensions: 206
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)