Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_L23
(892 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45456| Best HMM Match : DUF963 (HMM E-Value=0.00083) 33 0.41
SB_44862| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.72
SB_43138| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.3e-14) 31 0.95
SB_22653| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.7
SB_35536| Best HMM Match : zf-C2H2 (HMM E-Value=0.0069) 31 1.7
SB_33134| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.7
SB_13046| Best HMM Match : La (HMM E-Value=5e-23) 31 1.7
SB_17610| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_3185| Best HMM Match : Sec63 (HMM E-Value=0) 30 2.2
SB_26008| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.7
SB_4910| Best HMM Match : HECT (HMM E-Value=5.8e-33) 28 8.8
SB_54629| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 8.8
>SB_45456| Best HMM Match : DUF963 (HMM E-Value=0.00083)
Length = 337
Score = 32.7 bits (71), Expect = 0.41
Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Frame = -1
Query: 448 GPCGAPRPCARCSASTVPKPPWPCRSRLRALPWRLLAKALSCCSTDSEPSFQALLKSCAS 269
G G P P + +P PP C+S +P L+A C D PS L +C S
Sbjct: 180 GSDGIPSPLVAYGSDGIPSPPVACKS--DGIPSTLVA-----CKFDGIPS---SLVACKS 229
Query: 268 FDLVSELNCC-SKVLWNSLVWC 206
+ S L C S + +SLV C
Sbjct: 230 DGITSSLAACESDGITSSLVGC 251
Score = 29.1 bits (62), Expect = 5.1
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
Frame = -1
Query: 439 GAPRPCARCSASTVPKPPWPCR-----SRLRALPWRLLAKALSCCSTDSEPS 299
G P P C +P PP C+ S L A + + +L C +D PS
Sbjct: 123 GIPSPLVACKFDDIPSPPVACKFDDIPSTLVACEFDGIPSSLVTCESDGIPS 174
>SB_44862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 438
Score = 31.9 bits (69), Expect = 0.72
Identities = 26/118 (22%), Positives = 47/118 (39%), Gaps = 4/118 (3%)
Frame = -1
Query: 439 GAPRPCARCSASTVPKPPWPCRSRLRALPWRLLAKALSCCSTDSEPSFQALLKSCASFDL 260
G PC+RC + P P R + WR LA ALS +T + A + + L
Sbjct: 95 GQNNPCSRCGLLSCPTTTSP-EKRRKTPSWRTLAPALSPSATQPAACYDA--AAVPALHL 151
Query: 259 VSELNCCSKVLWNSLVWCSM--SLKKSGASRRTIAPWARAMQAKR--TTNLAAMMYCR 98
C+ ++ + ++ + A+ + + P +M R T+ ++CR
Sbjct: 152 GGLFPYCAYTYTYKMIADQLWSAMHELAAAAKRVTPMVSSMDGNRLLETDTPVTVHCR 209
>SB_43138| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.3e-14)
Length = 1709
Score = 31.5 bits (68), Expect = 0.95
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Frame = +2
Query: 458 VEKNATALREKLQAAVQNTVQESQKLAKKV--------SSNVQETNEKLAPKIKAAYDDF 613
VEK A L+EK Q + V + ++ +K S ++ETN L K ++ +
Sbjct: 561 VEKKAKELKEKYQGELNEKVNKVERTLRKQYEEDIVKGRSELEETNRTLKEKYESEVSEI 620
Query: 614 AKNTQEVIKKIQEAANAKQ 670
++V ++ QE A+Q
Sbjct: 621 MLQMEQVQQRNQEVFEAQQ 639
>SB_22653| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 737
Score = 30.7 bits (66), Expect = 1.7
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +3
Query: 195 KDIEHHTKEFHKTLEQQFNSLTKSKDAQDFSKAWKDGSESVLQQLN 332
+ IEH + K +QQF+S K+ D D S K+ + ++ L+
Sbjct: 468 RSIEHKIQRLEKKFDQQFSSTEKNMDKNDSSLPKKEIFQQIVTDLS 513
>SB_35536| Best HMM Match : zf-C2H2 (HMM E-Value=0.0069)
Length = 657
Score = 30.7 bits (66), Expect = 1.7
Identities = 16/65 (24%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Frame = +2
Query: 461 EKNATALREKLQAAVQNTVQ-ESQKLAKKVSSNVQETNEKLAPKIKAAYDDFAKNTQEVI 637
E+ AL EK + T+Q E +K +K+ + ++ET E + ++++ + + + T+++
Sbjct: 225 EEKLNALLEKEKIVEMTTLQLEDEK--EKIKNELEETKELMQAELESQAETYTEQTRKMH 282
Query: 638 KKIQE 652
++QE
Sbjct: 283 SELQE 287
>SB_33134| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2208
Score = 30.7 bits (66), Expect = 1.7
Identities = 17/61 (27%), Positives = 34/61 (55%)
Frame = +2
Query: 467 NATALREKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYDDFAKNTQEVIKKI 646
+ATA +E+L++AV+ + KL K+S+ ET K A Y+ + ++ +K++
Sbjct: 964 DATASKEELESAVEEKAKAETKLKVKISA--LETKLKKAVNETKRYESSSSQLKQQVKEL 1021
Query: 647 Q 649
+
Sbjct: 1022 E 1022
>SB_13046| Best HMM Match : La (HMM E-Value=5e-23)
Length = 442
Score = 30.7 bits (66), Expect = 1.7
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +2
Query: 479 LREKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYDDFAKNTQEVIKKI 646
L+E+ ++ + +Q+ +K K+ S Q+T APK K A TQ KI
Sbjct: 340 LKEEYKSLQRQAMQDLKKQLKQTSEAQQQTETNSAPKAKPAKPSVPSPTQTAPNKI 395
>SB_17610| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 132
Score = 30.3 bits (65), Expect = 2.2
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -1
Query: 427 PCARCSASTVPKPPWPCRSRLRALPWRLLAKALSCCSTDSEPSFQALL 284
P +RC + P P + R + L WR LA ALS +T + A L
Sbjct: 54 PWSRCGLLSCPTTTSPAKRR-KTLSWRTLAPALSPSATQPDACCDAAL 100
>SB_3185| Best HMM Match : Sec63 (HMM E-Value=0)
Length = 2590
Score = 30.3 bits (65), Expect = 2.2
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +2
Query: 461 EKNATALREKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYDDFAKNTQ 628
EKN L E +A+QNT+Q + + E A KI+A + K T+
Sbjct: 272 EKNGIFLSEDSYSAMQNTIQSQTSRITHFETRLPEMEADFAAKIEAMEAELQKVTE 327
>SB_26008| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 487
Score = 28.7 bits (61), Expect = 6.7
Identities = 20/67 (29%), Positives = 35/67 (52%)
Frame = +2
Query: 470 ATALREKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYDDFAKNTQEVIKKIQ 649
A +++ QA + T E+QKL + +++ QETNE + K + +KNTQ+ +
Sbjct: 72 AEKIKQLEQALKEKTHNETQKLDRILATCHQETNEVINSK---SISHESKNTQKRSPTLT 128
Query: 650 EAANAKQ 670
+ KQ
Sbjct: 129 MTEHCKQ 135
>SB_4910| Best HMM Match : HECT (HMM E-Value=5.8e-33)
Length = 958
Score = 28.3 bits (60), Expect = 8.8
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = -1
Query: 373 SRLRALPWRLLAKALSCCSTDSEPSFQALLKSCASFDLVSELNCCSKVLWNSL 215
S L + W L + + C + D PS L +C D +SE + C K LW +L
Sbjct: 420 SALSLITWNELERGI-CGNPDVSPS--VLKSACKYGDDLSESSECIKFLWAAL 469
>SB_54629| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1296
Score = 28.3 bits (60), Expect = 8.8
Identities = 18/74 (24%), Positives = 38/74 (51%)
Frame = +2
Query: 473 TALREKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYDDFAKNTQEVIKKIQE 652
TA + K ++ Q+ ++ A+KV S QET+ + +DD +++ +I + +
Sbjct: 362 TAKKRKKRSKWIGRRQKVKRRARKVPSGCQETSSSIINGNDEEFDDENMHSETIITE-NQ 420
Query: 653 AANAKQ*ASILNSH 694
N + +SI+N +
Sbjct: 421 TINEETSSSIINGN 434
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,198,789
Number of Sequences: 59808
Number of extensions: 312014
Number of successful extensions: 1269
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1264
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2550281014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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