Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_L21
         (978 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK093255-1|BAC04111.1|  623|Homo sapiens protein ( Homo sapiens ...    31   6.4  
AY684169-1|AAT74627.1| 3052|Homo sapiens REV3-like, catalytic su...    31   8.5  
AL512325-1|CAI20998.1| 3130|Homo sapiens REV3-like, catalytic su...    31   8.5  
AL136310-2|CAI20509.1| 3130|Homo sapiens REV3-like, catalytic su...    31   8.5  
AL080317-2|CAI19192.1| 3130|Homo sapiens REV3-like, catalytic su...    31   8.5  
AF179429-1|AAG09403.1| 3052|Homo sapiens DNA polymerase zeta cat...    31   8.5  
AF179428-1|AAG09402.1| 3052|Homo sapiens DNA polymerase zeta cat...    31   8.5  
AF157476-1|AAD40184.1| 3130|Homo sapiens DNA polymerase zeta cat...    31   8.5  
AF078695-1|AAC28460.1| 3052|Homo sapiens DNA polymerase zeta cat...    31   8.5  
AF071798-1|AAC24009.1| 3130|Homo sapiens DNA polymerase zeta cat...    31   8.5  
AF058701-1|AAC24357.1| 3130|Homo sapiens DNA polymerase zeta cat...    31   8.5  
AF035537-1|AAB88486.1| 3052|Homo sapiens DNA polymerase zeta pro...    31   8.5  

>AK093255-1|BAC04111.1|  623|Homo sapiens protein ( Homo sapiens
           cDNA FLJ35936 fis, clone TESTI2011448, weakly similar to
           Human l(3)mbt protein homolog mRNA. ).
          Length = 623

 Score = 31.1 bits (67), Expect = 6.4
 Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
 Frame = -3

Query: 445 DLRCS--ARKVYKQITIIIEEILNFEQQTALIVSEQIDGRSP*LLLTRTHCCNDLVPRMR 272
           D+R S  AR    ++   ++ +L  E+       EQIDG++  LLLT+T    D+V  M+
Sbjct: 534 DIRASQVARWTVDEVAEFVQSLLGCEEHAKCFKKEQIDGKA-FLLLTQT----DIVKVMK 588

Query: 271 IKV 263
           IK+
Sbjct: 589 IKL 591


>AY684169-1|AAT74627.1| 3052|Homo sapiens REV3-like, catalytic
           subunit of DNA polymerase zeta (yeast) protein.
          Length = 3052

 Score = 30.7 bits (66), Expect = 8.5
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = +1

Query: 151 PACAFTHNIKMLAKMAPSQDKLVHLHKTPTSLDINPSGLLFAFVELNHYNNECESEG 321
           P+  +T NI+ + K +P     +H+H+ P    +  +   F F +LNH  N+  SEG
Sbjct: 596 PSRKYT-NIRKIEKDSP----FIHMHRHPNENTLGKNS--FNFSDLNHSKNKVSSEG 645


>AL512325-1|CAI20998.1| 3130|Homo sapiens REV3-like, catalytic
           subunit of DNA polymerase zeta (yeast) protein.
          Length = 3130

 Score = 30.7 bits (66), Expect = 8.5
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = +1

Query: 151 PACAFTHNIKMLAKMAPSQDKLVHLHKTPTSLDINPSGLLFAFVELNHYNNECESEG 321
           P+  +T NI+ + K +P     +H+H+ P    +  +   F F +LNH  N+  SEG
Sbjct: 674 PSRKYT-NIRKIEKDSP----FIHMHRHPNENTLGKNS--FNFSDLNHSKNKVSSEG 723


>AL136310-2|CAI20509.1| 3130|Homo sapiens REV3-like, catalytic
           subunit of DNA polymerase zeta (yeast) protein.
          Length = 3130

 Score = 30.7 bits (66), Expect = 8.5
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = +1

Query: 151 PACAFTHNIKMLAKMAPSQDKLVHLHKTPTSLDINPSGLLFAFVELNHYNNECESEG 321
           P+  +T NI+ + K +P     +H+H+ P    +  +   F F +LNH  N+  SEG
Sbjct: 674 PSRKYT-NIRKIEKDSP----FIHMHRHPNENTLGKNS--FNFSDLNHSKNKVSSEG 723


>AL080317-2|CAI19192.1| 3130|Homo sapiens REV3-like, catalytic
           subunit of DNA polymerase zeta (yeast) protein.
          Length = 3130

 Score = 30.7 bits (66), Expect = 8.5
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = +1

Query: 151 PACAFTHNIKMLAKMAPSQDKLVHLHKTPTSLDINPSGLLFAFVELNHYNNECESEG 321
           P+  +T NI+ + K +P     +H+H+ P    +  +   F F +LNH  N+  SEG
Sbjct: 674 PSRKYT-NIRKIEKDSP----FIHMHRHPNENTLGKNS--FNFSDLNHSKNKVSSEG 723


>AF179429-1|AAG09403.1| 3052|Homo sapiens DNA polymerase zeta
           catalytic subunit variant 2 protein.
          Length = 3052

 Score = 30.7 bits (66), Expect = 8.5
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = +1

Query: 151 PACAFTHNIKMLAKMAPSQDKLVHLHKTPTSLDINPSGLLFAFVELNHYNNECESEG 321
           P+  +T NI+ + K +P     +H+H+ P    +  +   F F +LNH  N+  SEG
Sbjct: 596 PSRKYT-NIRKIEKDSP----FIHMHRHPNENTLGKNS--FNFSDLNHSKNKVSSEG 645


>AF179428-1|AAG09402.1| 3052|Homo sapiens DNA polymerase zeta
           catalytic subunit variant 1 protein.
          Length = 3052

 Score = 30.7 bits (66), Expect = 8.5
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = +1

Query: 151 PACAFTHNIKMLAKMAPSQDKLVHLHKTPTSLDINPSGLLFAFVELNHYNNECESEG 321
           P+  +T NI+ + K +P     +H+H+ P    +  +   F F +LNH  N+  SEG
Sbjct: 596 PSRKYT-NIRKIEKDSP----FIHMHRHPNENTLGKNS--FNFSDLNHSKNKVSSEG 645


>AF157476-1|AAD40184.1| 3130|Homo sapiens DNA polymerase zeta
           catalytic subunit protein.
          Length = 3130

 Score = 30.7 bits (66), Expect = 8.5
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = +1

Query: 151 PACAFTHNIKMLAKMAPSQDKLVHLHKTPTSLDINPSGLLFAFVELNHYNNECESEG 321
           P+  +T NI+ + K +P     +H+H+ P    +  +   F F +LNH  N+  SEG
Sbjct: 674 PSRKYT-NIRKIEKDSP----FIHMHRHPNENTLGKNS--FNFSDLNHSKNKVSSEG 723


>AF078695-1|AAC28460.1| 3052|Homo sapiens DNA polymerase zeta
           catalytic subunit protein.
          Length = 3052

 Score = 30.7 bits (66), Expect = 8.5
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = +1

Query: 151 PACAFTHNIKMLAKMAPSQDKLVHLHKTPTSLDINPSGLLFAFVELNHYNNECESEG 321
           P+  +T NI+ + K +P     +H+H+ P    +  +   F F +LNH  N+  SEG
Sbjct: 596 PSRKYT-NIRKIEKDSP----FIHMHRHPNENTLGKNS--FNFSDLNHSKNKVSSEG 645


>AF071798-1|AAC24009.1| 3130|Homo sapiens DNA polymerase zeta
           catalytic subunit protein.
          Length = 3130

 Score = 30.7 bits (66), Expect = 8.5
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = +1

Query: 151 PACAFTHNIKMLAKMAPSQDKLVHLHKTPTSLDINPSGLLFAFVELNHYNNECESEG 321
           P+  +T NI+ + K +P     +H+H+ P    +  +   F F +LNH  N+  SEG
Sbjct: 674 PSRKYT-NIRKIEKDSP----FIHMHRHPNENTLGKNS--FNFSDLNHSKNKVSSEG 723


>AF058701-1|AAC24357.1| 3130|Homo sapiens DNA polymerase zeta
           catalytic subunit protein.
          Length = 3130

 Score = 30.7 bits (66), Expect = 8.5
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = +1

Query: 151 PACAFTHNIKMLAKMAPSQDKLVHLHKTPTSLDINPSGLLFAFVELNHYNNECESEG 321
           P+  +T NI+ + K +P     +H+H+ P    +  +   F F +LNH  N+  SEG
Sbjct: 674 PSRKYT-NIRKIEKDSP----FIHMHRHPNENTLGKNS--FNFSDLNHSKNKVSSEG 723


>AF035537-1|AAB88486.1| 3052|Homo sapiens DNA polymerase zeta
           protein.
          Length = 3052

 Score = 30.7 bits (66), Expect = 8.5
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = +1

Query: 151 PACAFTHNIKMLAKMAPSQDKLVHLHKTPTSLDINPSGLLFAFVELNHYNNECESEG 321
           P+  +T NI+ + K +P     +H+H+ P    +  +   F F +LNH  N+  SEG
Sbjct: 596 PSRKYT-NIRKIEKDSP----FIHMHRHPNENTLGKNS--FNFSDLNHSKNKVSSEG 645


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,884,215
Number of Sequences: 237096
Number of extensions: 1838075
Number of successful extensions: 3176
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3173
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 13047299170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)