Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_L21
         (978 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g20400.1 68415.m02381 myb family transcription factor contain...    31   1.2  
At1g21830.1 68414.m02731 expressed protein EST gb|T21171 comes f...    30   2.7  
At4g26490.1 68417.m03812 expressed protein                             28   8.2  

>At2g20400.1 68415.m02381 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 397

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +2

Query: 395 NDDCDLLINFPSAATKIEINNTTSFYPPSPXELKPSPAELANDL 526
           +DD + + N+P  +   E+++T S  PPS     P+P+E A D+
Sbjct: 32  DDDANSMENYPLRSIPTELSHTCSLIPPS----LPNPSEAAADM 71


>At1g21830.1 68414.m02731 expressed protein EST gb|T21171 comes from
           this gene
          Length = 206

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 1/102 (0%)
 Frame = +3

Query: 150 TSVCLHAQYKNACQNGALTGQVSPSSQNTNIIRHQSLWTFIRIRGTKSLQQ*VRV-RRSH 326
           T VC+     N   N     Q SP + NT+I+ H S  + +R R  K +     V +   
Sbjct: 111 TKVCVDNNNNNTT-NSTCKKQQSPITSNTSIVEHNSAKSSLRWR--KRIGHLFHVIKLKS 167

Query: 327 GLRPSICSLTMSAVCCSKLRISSMMIVICL*TFRALQRRSKS 452
           G   S C +  S V  +K+R    M+       R   R+SKS
Sbjct: 168 GSSTSSCHVAPSKVEGTKVRKQGWMVRTLT---RKKSRKSKS 206


>At4g26490.1 68417.m03812 expressed protein 
          Length = 200

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 368 LLLEVEDFFNDDCDLLINFPSAATKIEI 451
           +  +  +FFN D  +L+NF +   KIE+
Sbjct: 63  IYFDTPEFFNGDLSMLVNFTNPNKKIEV 90


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,086,310
Number of Sequences: 28952
Number of extensions: 261027
Number of successful extensions: 584
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2373009312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)