Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_L20
         (866 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces pombe...    29   0.65 
SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyc...    29   1.1  
SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces pom...    28   2.0  
SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces pomb...    28   2.0  
SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces po...    28   2.0  
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    27   3.5  
SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein |Schi...    26   6.0  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    26   8.0  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   8.0  

>SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 408

 Score = 29.5 bits (63), Expect = 0.65
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
 Frame = +2

Query: 122 SFFGGMLPSCFSESARQRHPLVLSCLLCF----GGGVLLATSLVHMLPEAREK 268
           S  G  LP   S+  + R  + +  L  F    G GV+LAT+ +H+L  A  K
Sbjct: 74  SLIGMNLPLVLSKITKNRPNVYIEYLYLFARYFGSGVILATAFIHLLAPACNK 126


>SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 542 ERITILLFLMNSYCTEPYDSRGTFEGYPPHRGIVLSI 432
           +R+   L++ N+YC++ Y  R   + Y P  G  L I
Sbjct: 7   KRLRAPLYIQNAYCSKNYFYRSFIQYYSPSNGPYLKI 43


>SPAC977.08 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 236

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +3

Query: 675 ASLPGRMCAQMVCILIFSGGSVTGIGMGAAWKMSEHSRSVAYVEPG 812
           +S+ G+M   + C+   +  ++ GI     W+M      V  +EPG
Sbjct: 100 SSIGGKMTFPLGCLYYGTKYAIEGISEALTWEMQSIGVKVKIIEPG 145


>SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
 Frame = -1

Query: 539 RITILLFLMNSYCTEPYDSRGTF-EGYPPHRGIVLSILHRDSAKTISQFHISSPDW 375
           R T    LMN    +PY +RG + +G PPH G+ L+   R+ A TIS  + S P+W
Sbjct: 258 RFTQRQILMN----DPYWNRGFYYDGVPPHTGMKLA---REVA-TIS--YRSGPEW 303


>SPBC1348.09 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 236

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +3

Query: 675 ASLPGRMCAQMVCILIFSGGSVTGIGMGAAWKMSEHSRSVAYVEPG 812
           +S+ G+M   + C+   +  ++ GI     W+M      V  +EPG
Sbjct: 100 SSIGGKMTFPLGCLYYGTKYAIEGISEALTWEMQSIGVKVKIIEPG 145


>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1250

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 428 GELRERCPGEVDNPQMCHVSHTAP 499
           G LRERC G+ DN ++  V+  AP
Sbjct: 283 GRLRERCVGDTDNAEL-KVTGVAP 305


>SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 446 CPGEVDNPQMCHVSHTAPCNRSSS 517
           C G +D PQ C V +T+P   S S
Sbjct: 63  CSGSMDAPQPCAVLYTSPSPSSIS 86


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
            E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +1

Query: 691  GCAPKWCASLYSA 729
            GC P WC SL SA
Sbjct: 1212 GCLPSWCISLTSA 1224


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -1

Query: 527  LLFLMNSYCTEPYDSRGTFEGYPPHRGIVLSILHRDSAKTISQFH 393
            +L ++ +Y  EPYD    F  Y  +R   L  L RDS+  ++  H
Sbjct: 1062 VLLIIGNYFNEPYDRASAFSLYMIYR---LETL-RDSSSALTLMH 1102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,589,820
Number of Sequences: 5004
Number of extensions: 81039
Number of successful extensions: 225
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)