Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_L20
(866 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4313| Best HMM Match : Zip (HMM E-Value=1.7e-39) 58 7e-09
SB_664| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.92
SB_56973| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_16160| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_29592| Best HMM Match : DUF1528 (HMM E-Value=6.8) 29 4.9
SB_33399| Best HMM Match : Ank (HMM E-Value=0) 29 4.9
SB_3455| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_38900| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17) 28 8.6
SB_5307| Best HMM Match : 7tm_1 (HMM E-Value=1.69557e-43) 28 8.6
SB_5096| Best HMM Match : NAD_binding_6 (HMM E-Value=0.044) 28 8.6
>SB_4313| Best HMM Match : Zip (HMM E-Value=1.7e-39)
Length = 318
Score = 58.4 bits (135), Expect = 7e-09
Identities = 59/207 (28%), Positives = 93/207 (44%), Gaps = 10/207 (4%)
Frame = +2
Query: 71 MNVTTAKVVSMLALGLGSFFGGMLPSCFSESARQRHPLVLSCLLCFGGGVLLATSLVHML 250
M K++ ++ L + G+LP R+R LS CF GV ATS + +L
Sbjct: 1 MEDLVVKIIVIIGLFCITLICGILPYKIGHGGRRRQQ-ALSLCNCFAAGVFFATSFLDLL 59
Query: 251 PEAREKYPNYSELMVCIGFFI------VYLVDEIFH----LCSTEINHGSPANQGLRYGT 400
P REK Y L + GF + FH + +T G+P G YG
Sbjct: 60 PMIREKI--YYVLRLLCGFDSRTSCPSCHKKARFFHGHSHVETTAPLLGTPPQNG--YGN 115
Query: 401 ERSSLLNRDGELRERCPGEVDNPQMCHVSHTAPCNRSSSGTIGLLCALFVHSLLEGLAIG 580
+ S + L ER ++++ ++ V T T L+ AL +HS+ EGLA+G
Sbjct: 116 KERSE-DSFTPLNERAH-QINSQELAEVDSTLR-------TYILVVALSLHSIFEGLALG 166
Query: 581 LQEDGTQVLLLLGAVASHKFVVAFCLG 661
L + +++ + AV HK ++AF +G
Sbjct: 167 LLVEVDRLVQIAAAVVIHKSIIAFSMG 193
>SB_664| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1046
Score = 31.5 bits (68), Expect = 0.92
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 176 HPLV-LSCLLCFGGGVLLATSLVHMLPEAREKYPNYSE 286
HP V L+ LLC V+L T H LP R +PN +E
Sbjct: 482 HPFVDLAYLLCSREDVVLFTRATHDLPSTRHGHPNPNE 519
>SB_56973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 628
Score = 29.5 bits (63), Expect = 3.7
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = +1
Query: 592 WNSGAASARSCRLSQVCRGVLPRALSCAPVCQVGCAPKWC 711
W S AR Q C+ P+ LSC C V C P C
Sbjct: 467 WTSSEGVARE--QLQSCKNQCPKTLSCGHRCGVECHPGAC 504
>SB_16160| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 373
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 452 GEVDNPQMCHVSHTAPCNRSSSGTIGLLCALFVHSLLEG 568
G + NP ++ A N SG+ G L ALF+ ++ G
Sbjct: 245 GSISNPGDAEIAAVAVVNTFISGSAGALTALFIKRIIPG 283
>SB_29592| Best HMM Match : DUF1528 (HMM E-Value=6.8)
Length = 129
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -1
Query: 728 AEYKDAHHLGAHPTWQTGAQLSARG-KTPRQTCERRQLLAEAAP 600
AEY+ AH A+P ++ +QL G + PR+ E R+ L P
Sbjct: 61 AEYRKAHEKIANPRFRKASQLIELGHEKPREAGETRRYLGYEKP 104
>SB_33399| Best HMM Match : Ank (HMM E-Value=0)
Length = 1416
Score = 29.1 bits (62), Expect = 4.9
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Frame = -2
Query: 751 PIPVTDPPLNIRMHTIWA--HIRPGRL--AHSSAPEAKRHDKLV 632
PIP T P L + MHT A + P R+ H+S P H L+
Sbjct: 134 PIPGTPPDLQLSMHTSMAIPSVPPPRVPPTHASQPPVLEHQDLL 177
>SB_3455| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 587
Score = 28.3 bits (60), Expect = 8.6
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 757 PMPIPVTDPPLNIRMHTIWAHIRPGRLAHSSAP 659
P+P+PV PP+ R + RPG++ H P
Sbjct: 492 PVPVPVRQPPMIQRFYYPVPVSRPGQIHHIPYP 524
>SB_38900| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17)
Length = 278
Score = 28.3 bits (60), Expect = 8.6
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 655 PRALSCAPVCQVGCAPKWCASLYSAVDP 738
P+A+ V +G A WCA L S +DP
Sbjct: 234 PKAVGNTAVKDLGIAAYWCAFLNSTLDP 261
>SB_5307| Best HMM Match : 7tm_1 (HMM E-Value=1.69557e-43)
Length = 632
Score = 28.3 bits (60), Expect = 8.6
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 655 PRALSCAPVCQVGCAPKWCASLYSAVDP 738
P+A+ V +G A WCA L S +DP
Sbjct: 269 PKAVGNTAVKDLGIAAYWCAFLNSTLDP 296
>SB_5096| Best HMM Match : NAD_binding_6 (HMM E-Value=0.044)
Length = 261
Score = 28.3 bits (60), Expect = 8.6
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 532 QSYCS**TPIARSRMTHVAHLRV 464
+SY TP R R+TH+AH R+
Sbjct: 137 ESYAPVPTPAKRRRLTHIAHARI 159
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,103,442
Number of Sequences: 59808
Number of extensions: 664629
Number of successful extensions: 2172
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2172
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2479240863
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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