Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_L19
         (1036 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    29   1.4  
SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces pom...    28   1.9  
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce...    28   2.5  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    26   7.6  

>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
            protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 15/36 (41%), Positives = 16/36 (44%)
 Frame = -3

Query: 1019 RGXRGGXRXFXGXKSXRXMGGRXXXXWGGXSRXXQR 912
            RG RGG R   G  S    GG     +GG SR   R
Sbjct: 144  RGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSR 179


>SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 291 NEHTDEVLQ-DIINKVEELRREIAQQPPNTPLTP 389
           N H + V   D+INK+  L+ E++Q   N P  P
Sbjct: 245 NFHNESVNNVDLINKINSLKEEVSQNVSNYPSFP 278


>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +3

Query: 258 LDKAITKFTNLNEHTDEVLQDIINKVEELRREIAQQPP 371
           LDK I K  +   + DE L +++NK  E + EI +Q P
Sbjct: 166 LDKRIFKLESKIGYADEPLSELLNKCME-KLEIVEQDP 202


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 15/81 (18%), Positives = 38/81 (46%)
 Frame = +3

Query: 246 VEQDLDKAITKFTNLNEHTDEVLQDIINKVEELRREIAQQPPNTPLTPEQAQVVSELAST 425
           +E++ +    + T + E   +  QD+++++E +R+E+        L+ ++    +     
Sbjct: 648 LEKNYEVYRNEMTAIQESLSKRNQDLLSEMEAIRKELENSKYQQQLSTDRLTNANNDVEA 707

Query: 426 IKQNAFQLSTDHXELHATXSR 488
            K+ A +L + +  L    SR
Sbjct: 708 FKKEAKELRSINQNLQDIISR 728


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,134,732
Number of Sequences: 5004
Number of extensions: 57866
Number of successful extensions: 145
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 541237406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)