Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_L19
         (1036 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44268| Best HMM Match : ACCA (HMM E-Value=0.58)                     73   4e-13
SB_48121| Best HMM Match : Kelch_1 (HMM E-Value=0.023)                 31   2.0  
SB_38304| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.39)               30   2.7  
SB_36542| Best HMM Match : Pox_A_type_inc (HMM E-Value=7.3e-11)        30   2.7  
SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053)                 29   8.1  
SB_9868| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   8.1  

>SB_44268| Best HMM Match : ACCA (HMM E-Value=0.58)
          Length = 281

 Score = 72.9 bits (171), Expect = 4e-13
 Identities = 33/92 (35%), Positives = 53/92 (57%)
 Frame = +3

Query: 228 MDSCIGVEQDLDKAITKFTNLNEHTDEVLQDIINKVEELRREIAQQPPNTPLTPEQAQVV 407
           MD+C+ VE++ +K   K   +  HTD  L D+ N V  L++EIA    +  L+P Q  V+
Sbjct: 1   MDACLSVEREQEKVSKKLRGIQTHTDATLGDLFNHVNNLQKEIADCNTDDELSPLQCHVL 60

Query: 408 SELASTIKQNAFQLSTDHXELHATXSRSGXGL 503
           S+ A  +K+   +L+T+H ELH   S+ G  +
Sbjct: 61  SQSAKKVKETVTRLATEHKELHGGISKIGKAI 92


>SB_48121| Best HMM Match : Kelch_1 (HMM E-Value=0.023)
          Length = 1169

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +3

Query: 288  LNEHTDEVLQDIINKVEELRREIAQQPPNTPLTPEQAQVVS 410
            +N+H  ++LQD+       RR I QQPP   L P  AQ +S
Sbjct: 974  INKHCVQLLQDVATTSAGDRRNI-QQPPQALLKPVSAQDLS 1013


>SB_38304| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.39)
          Length = 704

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
 Frame = +3

Query: 222 KTMDSCIGVE-QDLDKAITKFTNLNEHTDEVLQDIINKVEELRREIAQQPPNTPLTPEQA 398
           K M+  +G +  +L   ++KF   NE     L   I  +E L   ++ QPP       Q+
Sbjct: 68  KLMNEQLGKQLAELLNHLSKFKVENERLRSELDQKIKSIEGLEERLSCQPPT------QS 121

Query: 399 QVVSELASTIKQNAFQLSTDHXELHATXSRSGXGL 503
           + VS LA     +    ST H +  AT +  G GL
Sbjct: 122 RGVSPLAPL---SIITSSTPHLDFAATQTSPGLGL 153


>SB_36542| Best HMM Match : Pox_A_type_inc (HMM E-Value=7.3e-11)
          Length = 1500

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
 Frame = +3

Query: 222  KTMDSCIGVE-QDLDKAITKFTNLNEHTDEVLQDIINKVEELRREIAQQPPNTPLTPEQA 398
            K M+  +G +  +L   ++KF   NE     L   I  +E L   ++ QPP       Q+
Sbjct: 1288 KLMNEQLGKQLAELLNHLSKFKVENERLRSELDQKIKSIEGLEERLSCQPPT------QS 1341

Query: 399  QVVSELASTIKQNAFQLSTDHXELHATXSRSGXGL 503
            + VS LA     +    ST H +  AT +  G GL
Sbjct: 1342 RGVSPLAPL---SIITSSTPHLDFAATQTSPGLGL 1373


>SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053)
          Length = 1152

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 15/60 (25%), Positives = 32/60 (53%)
 Frame = +3

Query: 222 KTMDSCIGVEQDLDKAITKFTNLNEHTDEVLQDIINKVEELRREIAQQPPNTPLTPEQAQ 401
           + +D      +D+DKA +K+ ++ E +    +DII+K +   R+I  +  +     ++AQ
Sbjct: 78  RDIDKAQSKYRDIDKAQSKYRDIIEKSRSKYRDIIDKAQSKYRDIIDKAQSKYRDIDKAQ 137


>SB_9868| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 471

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 369 PNTPLTPEQAQVVSELASTIKQNAFQLST 455
           P TP TP QA V  + A   KQ +F +++
Sbjct: 413 PQTPATPSQANVADKKAKLQKQKSFTVTS 441


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,555,250
Number of Sequences: 59808
Number of extensions: 429455
Number of successful extensions: 1064
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1043
length of database: 16,821,457
effective HSP length: 83
effective length of database: 11,857,393
effective search space used: 3094779573
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)