Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_L19
         (1036 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    26   0.48 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    26   0.48 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    25   1.5  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 26.2 bits (55), Expect = 0.48
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +2

Query: 437 CISIV--NRSXRTP-CYXVXEWARSIHRHLVPRLMPAXASQY 553
           C+++V  N   R+P  + +  W + +  H++PRL+     QY
Sbjct: 323 CVTVVVLNVHFRSPQTHKMAPWVKRVFIHILPRLLVMRRPQY 364


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 26.2 bits (55), Expect = 0.48
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +2

Query: 437 CISIV--NRSXRTP-CYXVXEWARSIHRHLVPRLMPAXASQY 553
           C+++V  N   R+P  + +  W + +  H++PRL+     QY
Sbjct: 323 CVTVVVLNVHFRSPQTHKMAPWVKRVFIHILPRLLVMRRPQY 364


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 24.6 bits (51), Expect = 1.5
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = +2

Query: 437 CISIV--NRSXRTP-CYXVXEWARSIHRHLVPRLM 532
           C+++V  N   R+P  + +  W R +  H++PRL+
Sbjct: 319 CVTVVVLNVHFRSPQTHVMAPWVRRVFIHVLPRLL 353


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,992
Number of Sequences: 438
Number of extensions: 5333
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 34588554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)