Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_L15
         (966 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    29   0.071
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    25   0.67 
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   3.6  

>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 28.7 bits (61), Expect = 0.071
 Identities = 13/36 (36%), Positives = 14/36 (38%)
 Frame = +2

Query: 803 GGXXPPRGXXXXXXPPPPPXXPPXPPPXXPPPXXDP 910
           G   PP G      PP P   P   PP  PP   +P
Sbjct: 161 GPALPPTGFLCNNYPPLPQVPPLPLPPIFPPTMINP 196


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 25.4 bits (53), Expect = 0.67
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -1

Query: 894 GGXXGGGXGGXXGGGGG 844
           GG  GGG  G  G GGG
Sbjct: 92  GGGRGGGRDGDRGDGGG 108



 Score = 22.2 bits (45), Expect = 6.2
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -1

Query: 897 GGGXXGGGXGGXXGGGG 847
           GGG  GG  G    GGG
Sbjct: 92  GGGRGGGRDGDRGDGGG 108


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = +2

Query: 854 PPXXPPXPPPXXPPPXXDPXNRXPP 928
           PP     PP    PP   P  R PP
Sbjct: 61  PPHHYGGPPSGGQPPQGMPYPRFPP 85


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,346
Number of Sequences: 336
Number of extensions: 2253
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 27306312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)