Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_L15
         (966 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.34 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   4.1  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.6 bits (56), Expect = 0.34
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = +2

Query: 815 PPRGXXXXXXPPPPPXXPPXPPPXXPP 895
           P RG        PPP  PP  PP   P
Sbjct: 34  PQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 25.0 bits (52), Expect = 1.0
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +2

Query: 845 PPPPPXXPPXPPPXXPPPXXDPXNRXPPXPXXXGGAPP 958
           P P P   P  P    PP  +P ++ PP P    GAPP
Sbjct: 23  PQPSPHQSPQAPQRGSPP--NP-SQGPP-PGGPPGAPP 56



 Score = 23.8 bits (49), Expect = 2.4
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +2

Query: 845 PPPPPXXPPXPPPXXPPPXXDP 910
           PP P   PP   P   PP  +P
Sbjct: 39  PPNPSQGPPPGGPPGAPPSQNP 60



 Score = 23.0 bits (47), Expect = 4.1
 Identities = 9/26 (34%), Positives = 10/26 (38%)
 Frame = +2

Query: 818 PRGXXXXXXPPPPPXXPPXPPPXXPP 895
           P+       P P    PP  PP  PP
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 22.2 bits (45), Expect = 7.2
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +1

Query: 247 PGCXPPPGGGXXXPP 291
           P   PPPGG    PP
Sbjct: 42  PSQGPPPGGPPGAPP 56


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +2

Query: 848 PPPPXXPPXPPPXXPP 895
           PP P  PP PP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 23.0 bits (47), Expect = 4.1
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +2

Query: 851 PPPXXPPXPPPXXPPP 898
           PP   PP PPP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,543
Number of Sequences: 438
Number of extensions: 5819
Number of successful extensions: 13
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31806957
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)