Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_L12
(922 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34561| Best HMM Match : No HMM Matches (HMM E-Value=.) 79 5e-15
SB_44923| Best HMM Match : Fibrillarin (HMM E-Value=0) 40 0.003
SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13) 39 0.005
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.007
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 38 0.015
SB_48719| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.080
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 35 0.11
SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.19
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 34 0.19
SB_42474| Best HMM Match : Collagen (HMM E-Value=0.14) 33 0.25
SB_9041| Best HMM Match : RRM_1 (HMM E-Value=1.4e-10) 33 0.25
SB_36390| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.25
SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.32
SB_28644| Best HMM Match : zf-CCCH (HMM E-Value=1.5e-05) 33 0.43
SB_29757| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.57
SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.57
SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035) 32 0.57
SB_33470| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.75
SB_56109| Best HMM Match : Collagen (HMM E-Value=0.79) 31 0.99
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 31 0.99
SB_6248| Best HMM Match : KH_1 (HMM E-Value=1.6e-41) 31 1.3
SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_45599| Best HMM Match : GRP (HMM E-Value=0.22) 31 1.3
SB_58404| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.7
SB_10571| Best HMM Match : Cas1p (HMM E-Value=1.8e-26) 31 1.7
SB_4460| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.7
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25) 30 2.3
SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33) 30 2.3
SB_16708| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_4609| Best HMM Match : EGF (HMM E-Value=8.9e-07) 30 2.3
SB_46152| Best HMM Match : DUF241 (HMM E-Value=0.62) 30 2.3
SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11) 30 3.0
SB_29063| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.0
SB_20476| Best HMM Match : AT_hook (HMM E-Value=0.014) 30 3.0
SB_19205| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_10576| Best HMM Match : La (HMM E-Value=6.9e-28) 29 4.0
SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18) 29 5.3
SB_1800| Best HMM Match : LEA_4 (HMM E-Value=7.4) 29 5.3
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_33973| Best HMM Match : ABC_tran (HMM E-Value=0) 29 5.3
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05) 29 7.0
SB_45304| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.0
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18) 29 7.0
SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.0
SB_32451| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.0
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.0
SB_59549| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_44117| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_58757| Best HMM Match : GRP (HMM E-Value=0.0041) 28 9.2
SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
>SB_34561| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 448
Score = 79.0 bits (186), Expect = 5e-15
Identities = 56/120 (46%), Positives = 68/120 (56%), Gaps = 6/120 (5%)
Frame = +1
Query: 163 DQIEMALDDIIKANKKTRIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITK 342
DQ++M+LDDIIK NKK+ GG GRGG G G V RGR RG +
Sbjct: 140 DQLDMSLDDIIKQNKKSSRGG-----------RGRGGSRGPGRRGGGPVGRGRTRG--NR 186
Query: 343 STNYSR-GDVNSTWKHDMFNDFGE--RKLQRNS---GTITTGPTKLLVSNLDFGVSDSDI 504
ST YSR ++ W+HD F+ G R S G I+TG +KL +SNLDFGVSDSDI
Sbjct: 187 STPYSRPRELPDRWQHDKFDGRGSGGRSFSGGSGGAGGISTG-SKLSISNLDFGVSDSDI 245
Score = 41.9 bits (94), Expect = 7e-04
Identities = 18/25 (72%), Positives = 22/25 (88%)
Frame = +2
Query: 581 TADVVFERKADAVKAMKQYNGVPLD 655
TA+VVF R+ DA +A+KQYNGVPLD
Sbjct: 25 TAEVVFVRREDAQQALKQYNGVPLD 49
Score = 36.7 bits (81), Expect = 0.026
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = +1
Query: 508 ELFSEFGILKSASVHYDRSGRS 573
ELFSEFG +K + VHYD SGRS
Sbjct: 1 ELFSEFGQVKRSCVHYDASGRS 22
>SB_44923| Best HMM Match : Fibrillarin (HMM E-Value=0)
Length = 304
Score = 39.9 bits (89), Expect = 0.003
Identities = 20/38 (52%), Positives = 22/38 (57%)
Frame = +1
Query: 220 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 333
GGG G + GRGGG GF+S R GG RG RGG
Sbjct: 45 GGGRGGPRGGGRGGGRGGGGGFKSPRGGG--RGGGRGG 80
>SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13)
Length = 260
Score = 39.1 bits (87), Expect = 0.005
Identities = 13/42 (30%), Positives = 27/42 (64%)
Frame = +1
Query: 442 TTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSG 567
++GP +L V+N+ F D+D++++F FG++ + Y+ G
Sbjct: 64 SSGPKRLHVTNIPFRFRDNDLRQMFGSFGVIADVEIIYNERG 105
Score = 28.3 bits (60), Expect = 9.2
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +2
Query: 590 VVFERKADAVKAMKQYNGVPLDGRAMNIQLATSEINTLRPEARNRI 727
V F A+A KA ++ NG +DGR + + L E + +R NR+
Sbjct: 129 VTFNTAAEANKAREKLNGTIVDGRKVEVSLC-MEQSYIRTRHFNRM 173
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 38.7 bits (86), Expect = 0.007
Identities = 17/41 (41%), Positives = 27/41 (65%)
Frame = +1
Query: 460 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLXY 582
L VSNL F +S+I+ELFS+ G++K + +R+G+ Y
Sbjct: 173 LFVSNLPFDAKESEIEELFSKHGVVKQVRLVTNRAGKPKGY 213
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 37.5 bits (83), Expect = 0.015
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = +1
Query: 448 GPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYD-RSGRSLXY 582
GPT+L V +L F ++++ +K +F FG + S + YD + RS Y
Sbjct: 240 GPTRLYVGSLHFNITEAMVKAVFEPFGTVDSVQLIYDSETNRSKGY 285
>SB_48719| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1880
Score = 35.1 bits (77), Expect = 0.080
Identities = 18/38 (47%), Positives = 18/38 (47%)
Frame = +1
Query: 220 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 333
GGG GR GRGG G R GG RGR GG
Sbjct: 150 GGGRGRGGGEGGWGGRGGNGGGRGGGEGGGGRGRGTGG 187
Score = 34.3 bits (75), Expect = 0.14
Identities = 18/43 (41%), Positives = 20/43 (46%)
Frame = +1
Query: 220 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKST 348
GG G + GRG G G S GG RGR RGG + T
Sbjct: 166 GGNGGGRGGGEGGGGRGRGTGGGSRGGGGDGRGRGRGGTEERT 208
Score = 29.1 bits (62), Expect = 5.3
Identities = 16/38 (42%), Positives = 16/38 (42%)
Frame = +1
Query: 220 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 333
G G G A GRGGG G G RG N GG
Sbjct: 134 GRGGGEGNGAGGGIGRGGGRGRGGGEGGWGGRGGNGGG 171
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 34.7 bits (76), Expect = 0.11
Identities = 17/51 (33%), Positives = 30/51 (58%)
Frame = +1
Query: 412 RKLQRNSGTITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRS 564
R +R + T PTKL V++L V+ ++E+FS +G +K+ + DR+
Sbjct: 1143 RSPRRRKRSPTPKPTKLYVAHLTRNVNKDHVQEIFSVYGRVKTVDLPTDRT 1193
>SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 33.9 bits (74), Expect = 0.19
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +1
Query: 457 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRS 573
KL + NL+F + +I++ F EFG+ K + SGRS
Sbjct: 10 KLYIGNLNFNSDEGEIEQAFEEFGVEKVDILRDKESGRS 48
Score = 28.7 bits (61), Expect = 7.0
Identities = 18/42 (42%), Positives = 22/42 (52%)
Frame = +1
Query: 208 KTRIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 333
KT GG GR+ +R GRGGG G+ G GR+ GG
Sbjct: 87 KTENRGGGGRR----ERGGRGGGGGYGGGGGYG-GGGRSYGG 123
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 33.9 bits (74), Expect = 0.19
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +1
Query: 454 TKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGR 570
++L++ NL F +++ +KE FS FG + ASV + GR
Sbjct: 247 SRLIIRNLAFNCTEAILKETFSAFGEVSEASVPQKKVGR 285
>SB_42474| Best HMM Match : Collagen (HMM E-Value=0.14)
Length = 221
Score = 33.5 bits (73), Expect = 0.25
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +1
Query: 262 GRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRG 363
GRGG AGFR GG+ RG RG + +RG
Sbjct: 129 GRGGAAGFRGRGRGGMTRGGPRGRASFGGRGARG 162
Score = 29.1 bits (62), Expect = 5.3
Identities = 20/43 (46%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Frame = +1
Query: 226 GAGRKF-DANKRTG-RGGGAGFRSNRSGGVQ--RGRNRGGITK 342
G GR A R G RG GF S GG RGR RGG+T+
Sbjct: 104 GPGRGMVGARGRAGFRGNRGGFTSPGRGGAAGFRGRGRGGMTR 146
>SB_9041| Best HMM Match : RRM_1 (HMM E-Value=1.4e-10)
Length = 141
Score = 33.5 bits (73), Expect = 0.25
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +1
Query: 454 TKLLVSNLDFGVSDSDIKELFSEFGILKSASV 549
T++ +SNL VS DI+ELF G+LKS +
Sbjct: 16 TRVTISNLHPAVSRQDIEELFGAIGVLKSCKM 47
Score = 29.9 bits (64), Expect = 3.0
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +2
Query: 584 ADVVFERKADAVKAMKQYNGVPLDGRAMNIQLA 682
A+VV+ K DAV A +Y+ LDG+ M +L+
Sbjct: 53 AEVVYTTKEDAVTAYARYHNRNLDGQPMQCKLS 85
>SB_36390| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 391
Score = 33.5 bits (73), Expect = 0.25
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +1
Query: 454 TKLLVSNLDFGVSDSDIKELFSEFGILKSASV 549
T++ +SNL VS DI+ELF G+LKS +
Sbjct: 221 TRVTISNLHPAVSRQDIEELFGAIGVLKSCKM 252
Score = 29.9 bits (64), Expect = 3.0
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +2
Query: 584 ADVVFERKADAVKAMKQYNGVPLDGRAMNIQLA 682
A+VV+ K DAV A +Y+ LDG+ M +L+
Sbjct: 258 AEVVYTTKEDAVTAYARYHNRNLDGQPMQCKLS 290
>SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 33.1 bits (72), Expect = 0.32
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +1
Query: 457 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGR 570
K+ + L FG ++ D+KE FS +G+++ Y G+
Sbjct: 203 KVFIGGLAFGTTEEDLKEYFSTYGMVEVKKAEYRERGQ 240
>SB_28644| Best HMM Match : zf-CCCH (HMM E-Value=1.5e-05)
Length = 267
Score = 32.7 bits (71), Expect = 0.43
Identities = 19/44 (43%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Frame = +1
Query: 205 KKTRIG-GGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 333
KKTR GG G F G GGG GF GG G GG
Sbjct: 74 KKTRASVGGRGGGFGGGGGFGGGGGGGFGGGGGGGFGGGGGGGG 117
>SB_29757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 300
Score = 32.3 bits (70), Expect = 0.57
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -1
Query: 334 CLHDFYLVVHHQSGCYEIQHR-LHVLFFCLHQIF 236
CLH + +H C + H LHVL+ CLH ++
Sbjct: 137 CLHVLHACLHVLYACLHVLHACLHVLYACLHVLY 170
Score = 29.5 bits (63), Expect = 4.0
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = -1
Query: 388 HVSKCCSHHPSNSW*ISLCLHDFYLVVHHQSGCYEIQHR-LHVLFFCLHQIFFQHHL 221
H+S C + C+H Y +H C + + LHVL CLH ++ H+
Sbjct: 112 HISICTVFLKECLHMLYACVHVLYECLHVLHACLHVLYACLHVLHACLHVLYACLHV 168
>SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1315
Score = 32.3 bits (70), Expect = 0.57
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
Frame = +1
Query: 172 EMALDDIIKANKKTRIGGGAGRKFDANKRTG-------RGGGAGFRSNRSGGVQRGRNRG 330
EM D + + K RI G+ + A K G GGG G + GG G ++G
Sbjct: 171 EMENDGTVDVDLKIRINPGSAKALCAAKCEGSTDEKKKEGGGGGEEGAKEGGESEGGDKG 230
Query: 331 GITKSTNYSRGDVNSTWK 384
G + + NS+ K
Sbjct: 231 GAKEEAKTTPAPENSSTK 248
>SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035)
Length = 258
Score = 32.3 bits (70), Expect = 0.57
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = +1
Query: 193 IKANKKTRIGGGAGRKFDANKRTGRGGGAGFRSN---RSGGVQRGRNRG 330
+K + ++ GG GR+ GRGGG G+RS R GG RG G
Sbjct: 113 LKVAEASKDSGGGGRR-GGGYGGGRGGGGGYRSGGGYRGGGGYRGGGGG 160
Score = 31.9 bits (69), Expect = 0.75
Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +1
Query: 220 GGGAGRKFDANKRTGRG--GGAGFRSNRSGGVQRGRNRGG 333
G G GR R+G G GG G+R GG RGR RGG
Sbjct: 131 GYGGGRGGGGGYRSGGGYRGGGGYRG--GGGGYRGRGRGG 168
>SB_33470| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 328
Score = 31.9 bits (69), Expect = 0.75
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Frame = +1
Query: 250 NKRTGRGGGAGFRSNRSGGVQRGRNRG--GITKSTNYSRGDVNSTWKHDMFNDFGERKLQ 423
++RTG G G+RS +RGR+RG G + YSR S K N G +
Sbjct: 18 SRRTGDRGYNGYRSPDDYYDRRGRDRGYDGRERDARYSREVTASAIK---VNPVGVAMEE 74
Query: 424 RN--SGTITTGPTKLLVSNLDFGVSDSD 501
N G I T T +++ L G+ SD
Sbjct: 75 VNLVGGAIATAVTAMMIMALTEGMHVSD 102
>SB_56109| Best HMM Match : Collagen (HMM E-Value=0.79)
Length = 327
Score = 31.5 bits (68), Expect = 0.99
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +1
Query: 217 IGGGAGRKFDANKRTG-RGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRGDVNSTWKHDM 393
+ GG G G GGGA F GG G + GG+T++T YS+ ++
Sbjct: 246 VNGGEGGLGTTGSEGGFGGGGAAFLYAGGGG---GYSGGGVTRATRYSKSGGGGSYNAGS 302
Query: 394 FNDFGERKLQRNSGTI 441
+ GE + Q+ G +
Sbjct: 303 GQE-GEVRGQKGEGRV 317
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 31.5 bits (68), Expect = 0.99
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +1
Query: 421 QRNSGTITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLXY 582
+++SG + V N+ + S+ +KE+FSE G + S + +DR +G+ Y
Sbjct: 14 KQSSGAADRSLRSVFVGNIPYEASEEQLKEIFSEVGPVISFRLVFDRETGKPKGY 68
>SB_6248| Best HMM Match : KH_1 (HMM E-Value=1.6e-41)
Length = 487
Score = 31.1 bits (67), Expect = 1.3
Identities = 19/56 (33%), Positives = 26/56 (46%)
Frame = +1
Query: 211 TRIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRGDVNST 378
T GG G+ F + G G G S ++GG N+GG + N + GD ST
Sbjct: 271 TAAGGQTGQDFSQDMS---GSGFGDSSFQAGGQMNQWNQGGASSGGNTAGGDQTST 323
Score = 29.9 bits (64), Expect = 3.0
Identities = 26/76 (34%), Positives = 37/76 (48%)
Frame = +1
Query: 223 GGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRGDVNSTWKHDMFND 402
GG G +FDA+ G GG G N GGV G GG T ++S+ D++ + D
Sbjct: 243 GGDGGRFDASNMGGATGGTG---NMFGGV-GGTAAGGQT-GQDFSQ-DMSGSGFGDSSFQ 296
Query: 403 FGERKLQRNSGTITTG 450
G + Q N G ++G
Sbjct: 297 AGGQMNQWNQGGASSG 312
>SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2396
Score = 31.1 bits (67), Expect = 1.3
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +2
Query: 665 MNIQLATSEINTLRPEARNRIGGASVGGTIRNNPKRGGGGIRNQ 796
M I++ S I+TL+P N G+ T RNNP+ G+R Q
Sbjct: 1 MTIRIMISMIDTLQPAGENN--GSIPVITSRNNPRTRSSGVRRQ 42
>SB_45599| Best HMM Match : GRP (HMM E-Value=0.22)
Length = 595
Score = 31.1 bits (67), Expect = 1.3
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = +1
Query: 253 KRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRGDVNSTWKHD 390
+R G GGG G GG + GR RG T +T R T + D
Sbjct: 511 RRRGGGGGGGGGGGGGGGGRGGRGRGRPTTTTTTRRCVTQKTQRAD 556
>SB_58404| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 532
Score = 30.7 bits (66), Expect = 1.7
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +1
Query: 226 GAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 333
G+ F + GRGG G R GG +RG+ RGG
Sbjct: 420 GSNDGFTQMRGGGRGGFRGNRGGFRGGNERGQRRGG 455
>SB_10571| Best HMM Match : Cas1p (HMM E-Value=1.8e-26)
Length = 765
Score = 30.7 bits (66), Expect = 1.7
Identities = 24/82 (29%), Positives = 29/82 (35%)
Frame = +1
Query: 220 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRGDVNSTWKHDMFN 399
GGG G G GGG G GG G GG GD + D N
Sbjct: 663 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGAGAGAGDDDGDGDVDSNN 722
Query: 400 DFGERKLQRNSGTITTGPTKLL 465
+ + LQ + TGP + L
Sbjct: 723 NLSD--LQLTVRYLQTGPPRYL 742
>SB_4460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 685
Score = 30.7 bits (66), Expect = 1.7
Identities = 19/45 (42%), Positives = 25/45 (55%)
Frame = +1
Query: 172 EMALDDIIKANKKTRIGGGAGRKFDANKRTGRGGGAGFRSNRSGG 306
+ LD+ + A ++R GGAGR F N+ GRG R NRS G
Sbjct: 197 QQELDNALLA--RSRQNGGAGRGF--NRTRGRGANHFNRGNRSSG 237
>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1597
Score = 30.3 bits (65), Expect = 2.3
Identities = 20/78 (25%), Positives = 27/78 (34%), Gaps = 1/78 (1%)
Frame = +1
Query: 220 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQR-GRNRGGITKSTNYSRGDVNSTWKHDMF 396
G G N GG + N +GG G N GG N + G+ N +
Sbjct: 434 GNNGGNNNGGNTGGDNNGGNNYGGNNNGGNNNVGNNNGGNNNGGNNNGGNNNGGNNNGGN 493
Query: 397 NDFGERKLQRNSGTITTG 450
N+ G + N G G
Sbjct: 494 NNGGNNNGENNGGNNNGG 511
Score = 30.3 bits (65), Expect = 2.3
Identities = 20/83 (24%), Positives = 26/83 (31%)
Frame = +1
Query: 202 NKKTRIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRGDVNSTW 381
N G N GG N +GG G N GG N + G+ N
Sbjct: 463 NNNVGNNNGGNNNGGNNNGGNNNGGNNNGGNNNGGNNNGENNGGNNNGGNNNGGNNNGGN 522
Query: 382 KHDMFNDFGERKLQRNSGTITTG 450
+ N+ G + N G G
Sbjct: 523 NNGGNNNGGNNNGENNGGNNNGG 545
Score = 28.7 bits (61), Expect = 7.0
Identities = 18/59 (30%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
Frame = +1
Query: 202 NKKTRIGGGAGRKFDANKRTGRGGG---AGFRSNRSGGVQRGRNRGGITKSTNYSRGDV 369
N GG G N G GG G +GG G N GG + +N G+V
Sbjct: 595 NNGGNTGGNNGGNTGGNNNGGNTGGNNNGGNTGGNNGGNTGGNNNGGNSGGSNSHSGEV 653
>SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)
Length = 159
Score = 30.3 bits (65), Expect = 2.3
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +1
Query: 220 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRG-RNRGGITKSTNYSR 360
GG G + GRGGG G+ R GG G R+ GG +K Y R
Sbjct: 109 GGYGGGRGGGGYGGGRGGG-GYGGGRGGGYGGGRRDYGGGSKGGGYDR 155
Score = 28.3 bits (60), Expect = 9.2
Identities = 16/38 (42%), Positives = 17/38 (44%)
Frame = +1
Query: 220 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 333
GGG G GRGGG G+ R GG G GG
Sbjct: 100 GGGYGGSSRGGYGGGRGGG-GYGGGRGGGGYGGGRGGG 136
>SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)
Length = 662
Score = 30.3 bits (65), Expect = 2.3
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +1
Query: 457 KLLVSNLDFGVSDSDIKELFSEFGIL 534
++ + NL GV D+D+ E+FS++G +
Sbjct: 358 QVFIGNLPSGVKDADVNEVFSKYGTI 383
>SB_16708| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 516
Score = 30.3 bits (65), Expect = 2.3
Identities = 26/71 (36%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Frame = +1
Query: 220 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGI-TKSTNYSRGDVNSTWKHDMF 396
GG GR R GRGGG G+ GG + G RGG S N W D
Sbjct: 397 GGYRGRGGRGGYR-GRGGGRGYYRGGRGGGRGGGGRGGRGGLRGEASEASPNRDWV-DYP 454
Query: 397 NDFGERKLQRN 429
D KLQ+N
Sbjct: 455 LDNDTSKLQKN 465
>SB_4609| Best HMM Match : EGF (HMM E-Value=8.9e-07)
Length = 287
Score = 30.3 bits (65), Expect = 2.3
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +1
Query: 220 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 333
GG GR+F +N G GGG G GG G G
Sbjct: 246 GGVGGRQFSSNSYGGFGGGGGACGCNGGGAGGGGGYSG 283
>SB_46152| Best HMM Match : DUF241 (HMM E-Value=0.62)
Length = 1110
Score = 30.3 bits (65), Expect = 2.3
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = -1
Query: 844 CTTTSFXVSPTCSTIALISNSSTSSFRIVSYSTPHTRTTNSISSLGP*SID 692
C+ + P C+T+ + V YSTPHT+ +S+ + S+D
Sbjct: 396 CSVVAMKRKPCCATLYHLYFDDVCLCEWVPYSTPHTQGMDSLQRMKASSVD 446
>SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 30.3 bits (65), Expect = 2.3
Identities = 20/58 (34%), Positives = 29/58 (50%)
Frame = +1
Query: 400 DFGERKLQRNSGTITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRS 573
D RK + T L V NLD V++ +++ FS+FG ++ A V D GRS
Sbjct: 108 DMATRKGRTLRVRFATHAAALRVKNLDNLVTNELLEQAFSQFGDVERAVVVCDVRGRS 165
>SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11)
Length = 248
Score = 29.9 bits (64), Expect = 3.0
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Frame = +1
Query: 220 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRG---RNRGGITKSTNYSR 360
GGG G GRGGG G+ R GG G R+ GG +K Y R
Sbjct: 196 GGGYGGSSRGGYGGGRGGG-GYGGGRGGGGGYGGGRRDYGGGSKGGGYDR 244
>SB_29063| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 29.9 bits (64), Expect = 3.0
Identities = 17/37 (45%), Positives = 17/37 (45%)
Frame = +1
Query: 220 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRG 330
GGG R G G G G R R GG RGR RG
Sbjct: 18 GGGGDRGRGRGHCLGHGSGRGGRGGR-GGSGRGRGRG 53
>SB_20476| Best HMM Match : AT_hook (HMM E-Value=0.014)
Length = 475
Score = 29.9 bits (64), Expect = 3.0
Identities = 22/72 (30%), Positives = 28/72 (38%)
Frame = +1
Query: 199 ANKKTRIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRGDVNST 378
A +R G G GR GRG G G R G RGR R K+ YS D
Sbjct: 345 AKSPSRRGRGRGRG------RGRGRGRGSSRGRGRGRGRGRGRAKRRKTKEYSDDDSEEE 398
Query: 379 WKHDMFNDFGER 414
++ + + R
Sbjct: 399 FEDEEDESYSPR 410
>SB_19205| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 169
Score = 29.5 bits (63), Expect = 4.0
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = +1
Query: 223 GGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRGDVNSTWKHDM 393
G +G D R+G GG G N SG + G + + D NS+ HD+
Sbjct: 84 GESGGDGDDGNRSGESGGGGDDGNSSGETGGDSDDGNRSGESGGDGDDGNSSGVHDL 140
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 29.5 bits (63), Expect = 4.0
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = +1
Query: 256 RTGRGGG--AGFRSNRSGGVQRGRNRGG 333
R G GGG G+R GG + GR+RGG
Sbjct: 139 RDGGGGGYRGGYRGGYRGGYRGGRDRGG 166
Score = 28.3 bits (60), Expect = 9.2
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +1
Query: 268 GGGAGFRSNRSGGVQRGRNRGGITKSTNYSRG 363
GGG G+R GG RG RGG + Y G
Sbjct: 141 GGGGGYRGGYRGGY-RGGYRGGRDRGGGYGGG 171
>SB_10576| Best HMM Match : La (HMM E-Value=6.9e-28)
Length = 711
Score = 29.5 bits (63), Expect = 4.0
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = +1
Query: 262 GRGGGAGFRSNRSGGVQRGRNRGGITKS 345
GRG G R R GG RGR RGG +S
Sbjct: 28 GRGSNRGGRGGRGGG--RGRGRGGRQRS 53
>SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18)
Length = 209
Score = 29.1 bits (62), Expect = 5.3
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +1
Query: 460 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYD-RSGRSLXY 582
L V L+ +D D++ +FS FG + S V D ++G SL Y
Sbjct: 122 LFVCKLNPVTTDEDLEIIFSRFGTILSCEVIRDQKTGESLQY 163
>SB_1800| Best HMM Match : LEA_4 (HMM E-Value=7.4)
Length = 186
Score = 29.1 bits (62), Expect = 5.3
Identities = 15/39 (38%), Positives = 17/39 (43%)
Frame = +1
Query: 220 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGI 336
GGG G D TG GGGA + G G GG+
Sbjct: 84 GGGGGATGDGGGATGGGGGATGGGGGATGGHGGATGGGV 122
>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 29.1 bits (62), Expect = 5.3
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +1
Query: 448 GPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRS 564
G T L V NL + + D+K++F ++G L + DR+
Sbjct: 14 GMTSLKVDNLTYRTTVEDLKQVFKKYGDLGDIYIPRDRN 52
>SB_33973| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1184
Score = 29.1 bits (62), Expect = 5.3
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = +1
Query: 262 GRGGGAGFRSNRSGGVQRGRNRGGITKS--TNYSRGDVNSTWKHDMFNDFGERKLQRNSG 435
G G G S G + GGIT S T + D N+ +D+ E L +G
Sbjct: 387 GAGAGTSDESRGGGESESAEEAGGITLSSVTCIAYEDNNNVLINDITVQLPEGSLTAVTG 446
Query: 436 TITTGPTKLLVS 471
+ +G T LL++
Sbjct: 447 PVGSGKTSLLLT 458
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 29.1 bits (62), Expect = 5.3
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +1
Query: 220 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGIT 339
GG +G F ++ G GG +G + G ++G RG T
Sbjct: 369 GGSSGGGFGSSMTNGFGGASGLTNGDDSGRRKGFGRGSRT 408
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 29.1 bits (62), Expect = 5.3
Identities = 20/68 (29%), Positives = 30/68 (44%)
Frame = +1
Query: 196 KANKKTRIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRGDVNS 375
+A + + GGG G + + GGG G+ R GG G RGG + +Y G +
Sbjct: 304 QARSREQRGGGRGGGYRS------GGGGGYGGGRGGGRGYGGGRGGGGR-RDYGGGSRSG 356
Query: 376 TWKHDMFN 399
D +N
Sbjct: 357 CDDQDSYN 364
Score = 28.3 bits (60), Expect = 9.2
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = +1
Query: 220 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRG---RNRGGITKST 348
GGG G GRGGG G+ R GG G R+ GG + ST
Sbjct: 105 GGGYGGSSRGGYGGGRGGG-GYGGGRGGGGSYGGGRRDYGGASIST 149
>SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)
Length = 1098
Score = 28.7 bits (61), Expect = 7.0
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +1
Query: 220 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRG 330
GGG G+ + GRG G G+ GG RG+ RG
Sbjct: 242 GGGMGQ---GPRGWGRGSGGGWGQGPGGGWGRGQGRG 275
>SB_45304| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 535
Score = 28.7 bits (61), Expect = 7.0
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +1
Query: 208 KTRIGGGAGRKFDANK-RTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRG 363
K+ + GGAG + + N G GGG G GG G GG + S + S G
Sbjct: 450 KSFLAGGAGGRSNQNDVEGGFGGGGGPNGAGGGGGGGGGYSGGASGSRSNSCG 502
>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
Length = 291
Score = 28.7 bits (61), Expect = 7.0
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +1
Query: 454 TKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR 561
TKL V + + D +++ F++FG ++ A V DR
Sbjct: 10 TKLFVGGIPYESGDDALRKFFAQFGEIREAVVIKDR 45
>SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 783
Score = 28.7 bits (61), Expect = 7.0
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +1
Query: 460 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLXY 582
L V NL+ G+S D++ F +FG++ + G+ Y
Sbjct: 239 LFVGNLETGISCQDLRLSFEKFGVVLDVDIKRPARGQGNTY 279
>SB_32451| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 924
Score = 28.7 bits (61), Expect = 7.0
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = +1
Query: 223 GGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 333
GG G + R G G G G R GG G +RGG
Sbjct: 749 GGYGNRSGGGYRGGGGYGGGGGGYRGGGGYGGGHRGG 785
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 28.7 bits (61), Expect = 7.0
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +1
Query: 454 TKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLXY 582
T L+++ + +S DIK++F G + S + DR +G+SL Y
Sbjct: 27 TNLIINYVPPSMSQEDIKKIFGTVGNVTSCKLIRDRATGQSLGY 70
>SB_59549| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2631
Score = 28.3 bits (60), Expect = 9.2
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Frame = +1
Query: 220 GGGAGRKFDANKRTG--RGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRGDVNST 378
GG G A+ G GG +G + SGG G + G STN S S+
Sbjct: 803 GGAGGSSGGASGGAGGSSGGASGGAGSSSGGASGGADGGSNKSSTNQSGNSSESS 857
>SB_44117| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 28.3 bits (60), Expect = 9.2
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +1
Query: 424 RNSGTITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGR 570
+N G I G + LV + F V+ +K+ +GI K S H R
Sbjct: 238 KNDGVIPVGTSFPLVKHTSFSVASMALKDNERNYGINKHPSSHEKEESR 286
>SB_58757| Best HMM Match : GRP (HMM E-Value=0.0041)
Length = 154
Score = 28.3 bits (60), Expect = 9.2
Identities = 19/65 (29%), Positives = 26/65 (40%)
Frame = +1
Query: 139 EFQIITMVDQIEMALDDIIKANKKTRIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRG 318
+F II+++ ++ DD + GGG G G GGG G GG G
Sbjct: 35 DFLIISIMKDKDLKDDDDDDDDDDDDDGGGGGGGGGGGGGGGGGGGGGGDDGDGGGGDGG 94
Query: 319 RNRGG 333
GG
Sbjct: 95 GGGGG 99
>SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1141
Score = 28.3 bits (60), Expect = 9.2
Identities = 17/48 (35%), Positives = 20/48 (41%)
Frame = +1
Query: 220 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRG 363
GGGA + R RG G G S G + R GG S + RG
Sbjct: 995 GGGASSAHIGHGRLTRGDGGGVSSVHIGHGRLTRGDGGGVSSVHIGRG 1042
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,651,853
Number of Sequences: 59808
Number of extensions: 504024
Number of successful extensions: 1900
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 1317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1756
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2669453024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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