Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_L12
         (922 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   3.0  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   3.0  
DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2 pr...    22   6.8  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 355 SRGDVNSTWKHDMFNDFGERKLQRNSG 435
           S  D++S W  D  +   E+K+ ++SG
Sbjct: 192 SGDDLSSEWDSDYTDKSNEKKIPKSSG 218


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -2

Query: 243 KFSSSTTSNPCL 208
           KF  S TSNPCL
Sbjct: 97  KFECSKTSNPCL 108


>DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2
           precursor protein.
          Length = 175

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 10/48 (20%), Positives = 22/48 (45%)
 Frame = +2

Query: 176 WHWMIL*KPTKRQGLEVVLEENLMQTKEQDVEAVLDFVATALVVYNEV 319
           W+W  L +P    G    L+ ++ + +EQ    +       +V +N++
Sbjct: 26  WNWNTLLRPNFLDGWYQTLQTHMKKVREQMAGILSRIPEQGVVNWNKI 73


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,745
Number of Sequences: 438
Number of extensions: 5206
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29992872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)