Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_L12
(922 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 98 8e-21
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 98 8e-21
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 89 4e-18
At1g66260.1 68414.m07522 RNA and export factor-binding protein, ... 68 8e-12
At5g37720.1 68418.m04541 RNA and export factor-binding protein, ... 68 1e-11
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 67 1e-11
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 45 6e-05
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 43 2e-04
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 40 0.002
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 39 0.005
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 38 0.007
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 38 0.012
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 37 0.022
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 37 0.022
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 36 0.029
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 36 0.038
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 36 0.050
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 36 0.050
At4g07480.1 68417.m01151 hypothetical protein 35 0.087
At2g15770.1 68415.m01808 glycine-rich protein contains a domain ... 34 0.12
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 34 0.15
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 33 0.27
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 33 0.27
At4g01985.1 68417.m00265 expressed protein 33 0.35
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 32 0.47
At1g77030.1 68414.m08970 glycine-rich protein 32 0.47
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 32 0.47
At5g62440.1 68418.m07837 expressed protein 32 0.61
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 32 0.61
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 32 0.61
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 32 0.61
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 32 0.61
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 32 0.61
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 31 0.81
At5g04290.1 68418.m00422 KOW domain-containing transcription fac... 31 0.81
At3g04640.1 68416.m00497 glycine-rich protein predicted proteins... 31 0.81
At1g55250.1 68414.m06310 expressed protein weak similarity to PU... 31 0.81
At5g35980.1 68418.m04333 protein kinase family protein contains ... 31 1.1
At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing ... 31 1.1
At4g23910.1 68417.m03439 expressed protein various predicted pro... 31 1.1
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 31 1.1
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 31 1.1
At3g05220.2 68416.m00570 heavy-metal-associated domain-containin... 31 1.1
At3g05220.1 68416.m00569 heavy-metal-associated domain-containin... 31 1.1
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 31 1.4
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 31 1.4
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 31 1.4
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 31 1.4
At1g55040.1 68414.m06287 zinc finger (Ran-binding) family protei... 31 1.4
At1g04800.1 68414.m00476 glycine-rich protein 31 1.4
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 30 1.9
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 30 1.9
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 30 1.9
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 30 1.9
At4g30460.1 68417.m04325 glycine-rich protein 30 1.9
At4g16830.1 68417.m02540 nuclear RNA-binding protein (RGGA) iden... 30 1.9
At2g15780.1 68415.m01809 glycine-rich protein similar to Blue co... 30 1.9
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 30 2.5
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 30 2.5
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 30 2.5
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 30 2.5
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 30 2.5
At5g33390.1 68418.m03985 glycine-rich protein similar to nuclear... 29 3.3
At4g27330.1 68417.m03921 sporocyteless (SPL) identical to sporoc... 29 3.3
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 29 3.3
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 29 3.3
At1g68640.1 68414.m07843 bZIP family transcription factor (PERIA... 29 3.3
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 29 3.3
At1g36675.1 68414.m04563 glycine-rich protein 29 3.3
At5g45720.1 68418.m05621 hypothetical protein 29 4.3
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 29 4.3
At1g76965.1 68414.m08961 glycine-rich protein 29 4.3
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 29 4.3
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 29 4.3
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 29 4.3
At1g31280.1 68414.m03828 PAZ domain-containing protein / piwi do... 29 4.3
At1g07135.1 68414.m00759 glycine-rich protein 29 4.3
At5g46730.1 68418.m05757 glycine-rich protein 29 5.7
At5g20250.2 68418.m02411 raffinose synthase family protein / see... 29 5.7
At5g20250.1 68418.m02410 raffinose synthase family protein / see... 29 5.7
At5g04440.1 68418.m00441 expressed protein 29 5.7
At4g29240.1 68417.m04182 leucine-rich repeat family protein / ex... 29 5.7
At3g56250.1 68416.m06251 expressed protein 29 5.7
At3g26400.1 68416.m03292 eukaryotic translation initiation facto... 29 5.7
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 29 5.7
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 29 5.7
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 29 5.7
At2g28670.1 68415.m03485 disease resistance-responsive family pr... 29 5.7
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 29 5.7
At1g69250.2 68414.m07935 nuclear transport factor 2 (NTF2) famil... 29 5.7
At1g36940.1 68414.m04604 hypothetical protein 29 5.7
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 28 7.6
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei... 28 7.6
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei... 28 7.6
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 28 7.6
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 28 7.6
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 28 7.6
At4g25630.1 68417.m03691 fibrillarin 2 (FIB2) identical to fibri... 28 7.6
At3g10040.1 68416.m01204 expressed protein est match 28 7.6
At3g06130.1 68416.m00704 heavy-metal-associated domain-containin... 28 7.6
At2g26700.1 68415.m03203 protein kinase family protein contains ... 28 7.6
At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /... 28 7.6
At1g72080.1 68414.m08332 hypothetical protein 28 7.6
At1g20220.1 68414.m02525 expressed protein 28 7.6
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 97.9 bits (233), Expect = 8e-21
Identities = 61/136 (44%), Positives = 79/136 (58%), Gaps = 1/136 (0%)
Frame = +1
Query: 169 IEMALDDIIKANKKTRIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKST 348
++M+LDD+I N+K+R G G R G G G+G G +R T+S
Sbjct: 5 LDMSLDDMIAKNRKSRGGAGPAR--------GTGSGSG-----PGPTRRNNPNRKSTRSA 51
Query: 349 NYSRGDVNSTWKHDMFNDFGE-RKLQRNSGTITTGPTKLLVSNLDFGVSDSDIKELFSEF 525
Y STW HDMF+D E + R+S I TG TKL +SNLD+GV + DIKELF+E
Sbjct: 52 PYQSAP-ESTWGHDMFSDRSEDHRSGRSSAGIETG-TKLYISNLDYGVMNEDIKELFAEV 109
Query: 526 GILKSASVHYDRSGRS 573
G LK +VH+DRSGRS
Sbjct: 110 GELKRYTVHFDRSGRS 125
Score = 54.0 bits (124), Expect = 1e-07
Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Frame = +2
Query: 581 TADVVFERKADAVKAMKQYNGVPLDGRAMNIQLATSEINTL-----RPEARNRIGGASVG 745
TA+VV+ R+ DA+ A+K+YN V LDG+ M I++ + + T RP N G G
Sbjct: 128 TAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAAPSGRPANGNSNGAPWRG 187
Query: 746 GTIRNNPKRGGG 781
G R +RGGG
Sbjct: 188 GQGRGGQQRGGG 199
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 97.9 bits (233), Expect = 8e-21
Identities = 61/137 (44%), Positives = 79/137 (57%), Gaps = 2/137 (1%)
Frame = +1
Query: 169 IEMALDDIIKANKKTRIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKST 348
++M+LDD+I N+K+R G G R G G G+G G +R T+S
Sbjct: 5 LDMSLDDMIAKNRKSRGGAGPAR--------GTGSGSG-----PGPTRRNNPNRKSTRSA 51
Query: 349 NYSRGDV-NSTWKHDMFNDFGE-RKLQRNSGTITTGPTKLLVSNLDFGVSDSDIKELFSE 522
Y STW HDMF+D E + R+S I TG TKL +SNLD+GV + DIKELF+E
Sbjct: 52 PYQSAKAPESTWGHDMFSDRSEDHRSGRSSAGIETG-TKLYISNLDYGVMNEDIKELFAE 110
Query: 523 FGILKSASVHYDRSGRS 573
G LK +VH+DRSGRS
Sbjct: 111 VGELKRYTVHFDRSGRS 127
Score = 54.0 bits (124), Expect = 1e-07
Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Frame = +2
Query: 581 TADVVFERKADAVKAMKQYNGVPLDGRAMNIQLATSEINTL-----RPEARNRIGGASVG 745
TA+VV+ R+ DA+ A+K+YN V LDG+ M I++ + + T RP N G G
Sbjct: 130 TAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAAPSGRPANGNSNGAPWRG 189
Query: 746 GTIRNNPKRGGG 781
G R +RGGG
Sbjct: 190 GQGRGGQQRGGG 201
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 89.0 bits (211), Expect = 4e-18
Identities = 63/149 (42%), Positives = 83/149 (55%), Gaps = 14/149 (9%)
Frame = +1
Query: 169 IEMALDDIIKANKKTRIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKST 348
++M+LDDIIK+N+K G G N GRGG + SG +R NR G ++
Sbjct: 5 LDMSLDDIIKSNRKPTGSRGRGGIGGGNNTGGRGGSG----SNSGPSRRFANRVG-ARTA 59
Query: 349 NYSRGDV-----NSTWKHDMFND-------FGERKLQRNSG--TITTGPTKLLVSNLDFG 486
YSR ++ W++D+F FG + G +I TG TKL +SNLD+G
Sbjct: 60 PYSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETG-TKLYISNLDYG 118
Query: 487 VSDSDIKELFSEFGILKSASVHYDRSGRS 573
VS+ DIKELFSE G LK +HYDRSGRS
Sbjct: 119 VSNEDIKELFSEVGDLKRYGIHYDRSGRS 147
Score = 44.8 bits (101), Expect = 8e-05
Identities = 18/39 (46%), Positives = 29/39 (74%)
Frame = +2
Query: 581 TADVVFERKADAVKAMKQYNGVPLDGRAMNIQLATSEIN 697
TA+VVF R+ DA+ A+K+YN V LDG+ M I++ + ++
Sbjct: 150 TAEVVFSRRGDALAAVKRYNNVQLDGKLMKIEIVGTNLS 188
>At1g66260.1 68414.m07522 RNA and export factor-binding protein,
putative similar to GI:7159943 from [Mus musculus] (RNA
6 (4), 638-650 (2000))
Length = 295
Score = 68.1 bits (159), Expect = 8e-12
Identities = 47/147 (31%), Positives = 73/147 (49%), Gaps = 9/147 (6%)
Frame = +1
Query: 157 MVDQIEMALDDIIKANKKTRIGGG--AGRKFDANKRTGRGGGAGFRSNRSGG--VQRGRN 324
M D + M LD+I+K +K R G+ GRGG G GG V+RG
Sbjct: 1 MSDALNMTLDEIVKKSKSERSAAARSGGKGVSRKSGRGRGGPNGVVGGGRGGGPVRRGPL 60
Query: 325 RGGITKSTNYS-----RGDVNSTWKHDMFNDFGERKLQRNSGTITTGPTKLLVSNLDFGV 489
S+++S R + W++ ND E L+ + T + ++NLD GV
Sbjct: 61 AVNTRPSSSFSINKLARRKRSLPWQNQ--NDLYEETLRAVGVSGVEVGTTVYITNLDQGV 118
Query: 490 SDSDIKELFSEFGILKSASVHYDRSGR 570
++ DI+EL++E G LK ++HYD++GR
Sbjct: 119 TNEDIRELYAEIGELKRYAIHYDKNGR 145
Score = 44.0 bits (99), Expect = 1e-04
Identities = 19/51 (37%), Positives = 33/51 (64%)
Frame = +2
Query: 581 TADVVFERKADAVKAMKQYNGVPLDGRAMNIQLATSEINTLRPEARNRIGG 733
+A+VV+ R++DA++AM++YN V LDGR M +++ + AR + G
Sbjct: 149 SAEVVYMRRSDAIQAMRKYNNVLLDGRPMKLEILGGNTESAPVAARVNVTG 199
>At5g37720.1 68418.m04541 RNA and export factor-binding protein,
putative transcriptional coactivator ALY, Mus musculus,
EMBL:MMU89876
Length = 288
Score = 67.7 bits (158), Expect = 1e-11
Identities = 50/140 (35%), Positives = 71/140 (50%), Gaps = 2/140 (1%)
Frame = +1
Query: 157 MVDQIEMALDDIIKANKKTRIGGGAGRKFDANKRTGRGGGA-GFRSNRSGGVQRGRNRGG 333
M + M LD+I+K K R GG R + GRGGG G R G +
Sbjct: 1 MSGALNMTLDEIVKRGKTARSGG---RGISRGRGRGRGGGGRGAGPARRGPLAVNARPSS 57
Query: 334 ITKSTNYSRGDVNST-WKHDMFNDFGERKLQRNSGTITTGPTKLLVSNLDFGVSDSDIKE 510
T + R V S W+ +F D G R + + G T+L V+NLD GV++ DI+E
Sbjct: 58 FTINKPVRR--VRSLPWQSGLFED-GLRAA--GASGVEVG-TRLHVTNLDQGVTNEDIRE 111
Query: 511 LFSEFGILKSASVHYDRSGR 570
LFSE G ++ ++HYD++GR
Sbjct: 112 LFSEIGEVERYAIHYDKNGR 131
Score = 47.2 bits (107), Expect = 2e-05
Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Frame = +2
Query: 581 TADVVFERKADAVKAMKQYNGVPLDGRAMNIQLATSEINTLRP-EARNRIGGASVGGTIR 757
TA+VV+ R++DA +A+K+YN V LDGR M +++ ++ P R + + G ++
Sbjct: 135 TAEVVYPRRSDAFQALKKYNNVLLDGRPMRLEILGGNNSSEAPLSGRVNVNVTGLNGRLK 194
Query: 758 NNP--KRGGGG 784
++GGGG
Sbjct: 195 RTVVIQQGGGG 205
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 67.3 bits (157), Expect = 1e-11
Identities = 36/62 (58%), Positives = 45/62 (72%), Gaps = 1/62 (1%)
Frame = +1
Query: 391 MFNDFGE-RKLQRNSGTITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSG 567
MF+D E + R+S I TG TKL +SNLD+GV + DIKELF+E G LK +VH+DRSG
Sbjct: 1 MFSDRSEDHRSGRSSAGIETG-TKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSG 59
Query: 568 RS 573
RS
Sbjct: 60 RS 61
Score = 54.0 bits (124), Expect = 1e-07
Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Frame = +2
Query: 581 TADVVFERKADAVKAMKQYNGVPLDGRAMNIQLATSEINTL-----RPEARNRIGGASVG 745
TA+VV+ R+ DA+ A+K+YN V LDG+ M I++ + + T RP N G G
Sbjct: 64 TAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAAPSGRPANGNSNGAPWRG 123
Query: 746 GTIRNNPKRGGG 781
G R +RGGG
Sbjct: 124 GQGRGGQQRGGG 135
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 45.2 bits (102), Expect = 6e-05
Identities = 37/116 (31%), Positives = 51/116 (43%), Gaps = 5/116 (4%)
Frame = +1
Query: 241 FDANKRTGRGG---GAGFRSNRSGGVQRGRNRG-GITKSTNYSRGDVNSTWKHDMFNDFG 408
F R+G G G G+ S R GG R G G + Y + + +G
Sbjct: 185 FSRGPRSGGYGSERGGGYGSERGGGYGSERGGGYGSERGGGYGSQRSGGGYGGSQRSSYG 244
Query: 409 ERKLQRNSGTITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRS 573
SG+ + +L V NL +GV D ++ LF+E G + A V YDR SGRS
Sbjct: 245 SGS---GSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRS 297
Score = 33.9 bits (74), Expect = 0.15
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = +1
Query: 388 DMFNDFGERK-LQRNSGTITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR- 561
DMF D + ++RNS + KL V NL F V + + +LF G ++ V YD+
Sbjct: 79 DMFADGDDSAPVERNS---FSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKV 135
Query: 562 SGRS 573
+GRS
Sbjct: 136 TGRS 139
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 43.2 bits (97), Expect = 2e-04
Identities = 36/115 (31%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Frame = +1
Query: 235 RKFDANKRTGRGGGAGFRSNRSGGVQRGRNRG-GITKSTNYSRGDVNSTWKHDMFNDFGE 411
++ ++ R R GG G S R GG R G G + Y + + +G
Sbjct: 180 KREESFSRGPRSGGYG--SERGGGYGSERGGGYGSERGGGYGSQRSGGGYGGSQRSSYGS 237
Query: 412 RKLQRNSGTITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRS 573
SG+ + +L V NL +GV D ++ LF+E G + A V YDR SGRS
Sbjct: 238 GS---GSGSGSGSGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRS 289
Score = 33.9 bits (74), Expect = 0.15
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = +1
Query: 388 DMFNDFGERK-LQRNSGTITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR- 561
DMF D + ++RNS + KL V NL F V + + +LF G ++ V YD+
Sbjct: 79 DMFADGDDSAPVERNS---FSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKV 135
Query: 562 SGRS 573
+GRS
Sbjct: 136 TGRS 139
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 40.3 bits (90), Expect = 0.002
Identities = 21/47 (44%), Positives = 28/47 (59%)
Frame = +1
Query: 430 SGTITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGR 570
SG + + L VSNLDF +++SDI LFS FG + +V DR R
Sbjct: 49 SGGLAPSKSTLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTR 95
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 38.7 bits (86), Expect = 0.005
Identities = 19/38 (50%), Positives = 24/38 (63%)
Frame = +1
Query: 460 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRS 573
L V NLD V+D ++ELF+EFG + S V D SG S
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTS 367
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 38.3 bits (85), Expect = 0.007
Identities = 18/40 (45%), Positives = 25/40 (62%)
Frame = +1
Query: 454 TKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRS 573
+ L V NLD +SD +KE+FS FG + S+ V D +G S
Sbjct: 132 SNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTS 171
Score = 37.5 bits (83), Expect = 0.012
Identities = 20/54 (37%), Positives = 29/54 (53%)
Frame = +1
Query: 412 RKLQRNSGTITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRS 573
R+ +R+S T T + V NL +D D+K F E+G + SA V D G+S
Sbjct: 15 RRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKS 68
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 37.5 bits (83), Expect = 0.012
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = +1
Query: 424 RNSGTITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLXY 582
R+ T +G + + NLD + + + E FS FG + S V D +GRS Y
Sbjct: 126 RDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGY 178
Score = 34.3 bits (75), Expect = 0.12
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +1
Query: 460 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRS 573
L + NLD V D +KE+FSE+G + S+ V + G S
Sbjct: 334 LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMS 371
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 36.7 bits (81), Expect = 0.022
Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = +1
Query: 457 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRS 573
++ V NL +GV D ++ LFSE G + A V YDR SGRS
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRS 244
Score = 31.9 bits (69), Expect = 0.61
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 457 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRS 573
KL V NL F V + + +LF G ++ V YD+ +GRS
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRS 131
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 36.7 bits (81), Expect = 0.022
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +1
Query: 415 KLQRNSGTITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRS 573
KLQR+ T + V NL +SD ++ ++F EFG+ S + D G+S
Sbjct: 211 KLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKS 263
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 36.3 bits (80), Expect = 0.029
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +1
Query: 424 RNSGTITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLXY 582
R+ T +G + + NLD + + + E FS FG + S V D GRS Y
Sbjct: 122 RDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGY 174
Score = 34.7 bits (76), Expect = 0.087
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +1
Query: 454 TKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRS 573
+ L + NLD V+D +KE+FSE+G + S V + G S
Sbjct: 328 SNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLS 367
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 35.9 bits (79), Expect = 0.038
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = +1
Query: 454 TKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRS 573
T + V NL +D+D+K LF EFG + SA V D G+S
Sbjct: 119 TNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKS 158
Score = 34.3 bits (75), Expect = 0.12
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = +1
Query: 460 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRS 573
L V NLD V ++ ++ELFSEFG + S V +G S
Sbjct: 225 LYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGIS 262
Score = 33.1 bits (72), Expect = 0.27
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +1
Query: 421 QRNSGTITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLXY 582
+R+ +G + V NLD + + + ++FS FG + S V D SG S Y
Sbjct: 20 ERDPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGY 73
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 35.5 bits (78), Expect = 0.050
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +1
Query: 433 GTITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRS 573
G++ TKL + L +G D+ +++ F+ FG + A V DR +GRS
Sbjct: 28 GSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRS 75
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 35.5 bits (78), Expect = 0.050
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +1
Query: 433 GTITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRS 573
G++ TKL + L +G D+ +++ F+ FG + A V DR +GRS
Sbjct: 28 GSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRS 75
>At4g07480.1 68417.m01151 hypothetical protein
Length = 158
Score = 34.7 bits (76), Expect = 0.087
Identities = 14/37 (37%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Frame = -1
Query: 640 VILFHSLHSIC-FSFKHNICS-TLKIYLTDHNVQMHF 536
++ FHSLH + FS + IC L++Y+ +H +++HF
Sbjct: 1 MVYFHSLHELSPFSTRWMICDMVLRVYIKEHKLRLHF 37
>At2g15770.1 68415.m01808 glycine-rich protein contains a domain
related to blue copper-binding protein; similar to
Stellacyanin (SP:P00302) {Rhus vernicifera}
Length = 301
Score = 34.3 bits (75), Expect = 0.12
Identities = 31/118 (26%), Positives = 46/118 (38%), Gaps = 4/118 (3%)
Frame = +1
Query: 229 AGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYS-RGDVNSTWKHDMFNDF 405
+G +N G G G G SNR G N G +S N+S + + +W + ND
Sbjct: 69 SGSGLGSNSNNGSGWGWGTGSNRGSGSGSSTNPDGSRRSWNWSLKSGWSWSWGSN-DNDS 127
Query: 406 GERKLQRNSGTITTGPTKLLVSNLDFGVSDSDIKELFSE---FGILKSASVHYDRSGR 570
SG P K++V D D K+ S+ F + YD+S +
Sbjct: 128 NSSGSDSGSGLDRETPKKIIVGGSDGWKKGLDYKDWASKNAPFYVNDVLVFKYDKSAK 185
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 33.9 bits (74), Expect = 0.15
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +1
Query: 454 TKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRS 573
+KL + L + V + +K+ FS FG + + YD+ SGRS
Sbjct: 41 SKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRS 81
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 33.1 bits (72), Expect = 0.27
Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Frame = +1
Query: 232 GRKFDANKRTGRGGGAGFR--SNRSGGVQRGRNRGGITKSTNYSRGDVNSTWKHDMFNDF 405
G K ++ TGR G GF ++ S ++ G S+ R + K
Sbjct: 202 GAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKKPLTMQPA 261
Query: 406 GERKLQRNSGTITTGPTKLLVSNLDFGVSDSDIKELFSEFGIL 534
+ Q NSG T + V +D V++ D+K +F +FG L
Sbjct: 262 SYQNTQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGEL 304
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 33.1 bits (72), Expect = 0.27
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 454 TKLLVSNLDFGVSDSDIKELFSEFGILKSASV 549
T + V LD V+D D+K+ FSEFG + S +
Sbjct: 306 TTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKI 337
>At4g01985.1 68417.m00265 expressed protein
Length = 579
Score = 32.7 bits (71), Expect = 0.35
Identities = 17/40 (42%), Positives = 19/40 (47%)
Frame = +1
Query: 217 IGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGI 336
IGGGAG G GGG R +SGG G GG+
Sbjct: 140 IGGGAGGAIGGGASGGVGGGGKGRGGKSGGGAGGGVGGGV 179
Score = 31.5 bits (68), Expect = 0.81
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = +1
Query: 217 IGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGI 336
+GGGAG G GGG R + GG G GG+
Sbjct: 85 VGGGAGGAIGGGASGGAGGGGKGRGRKGGGGAGGGVGGGV 124
Score = 30.7 bits (66), Expect = 1.4
Identities = 17/39 (43%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = +1
Query: 220 GGGAGRKFDANKRTGRGGGAGFRSNRSGGV-QRGRNRGG 333
GGGAG A G G G SGGV G+ RGG
Sbjct: 127 GGGAGGSVGAGGGIGGGAGGAIGGGASGGVGGGGKGRGG 165
Score = 29.9 bits (64), Expect = 2.5
Identities = 18/40 (45%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = +1
Query: 217 IGGGA-GRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 333
IGGGA G K GR GG G GGV G GG
Sbjct: 93 IGGGASGGAGGGGKGRGRKGGGGAGGGVGGGVGAGGGAGG 132
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/39 (41%), Positives = 17/39 (43%)
Frame = +1
Query: 217 IGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 333
+G GAG G GGG G SGGV G GG
Sbjct: 49 VGAGAGGGASGGIGVGGGGGGGGGIGGSGGVGAGGGVGG 87
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/37 (40%), Positives = 15/37 (40%)
Frame = +1
Query: 220 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRG 330
GGG G A G GGG G GGV G G
Sbjct: 471 GGGTGGSVGAGGGVGVGGGGGIGGGAGGGVGGGVGGG 507
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 32.3 bits (70), Expect = 0.47
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = +1
Query: 457 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRS 573
++ V NL + V + +++LFSE G + A V YDR +GRS
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRS 284
>At1g77030.1 68414.m08970 glycine-rich protein
Length = 349
Score = 32.3 bits (70), Expect = 0.47
Identities = 32/97 (32%), Positives = 41/97 (42%), Gaps = 6/97 (6%)
Frame = +1
Query: 223 GGAGRKFDANK-RTGRGGGAGFRSNRSGG--VQRGRNRGGITKSTNYSRGDVNSTWKHDM 393
GG GR F ++ R GR GG F R G RG RGG RG S D
Sbjct: 232 GGGGRDFGSSSDRGGRSGGRDFGGRRGGASTSSRGGKRGG-------GRGGGESDPTLDT 284
Query: 394 FNDFGERKLQRNSGTITTGPTK---LLVSNLDFGVSD 495
D ++ ++ I T+ ++VS LDF SD
Sbjct: 285 CTDDSLFHVRLSNDDIRYSTTRFYGVVVSTLDFESSD 321
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +1
Query: 250 NKRTGRGGGAGFRSNRSGGVQRGR 321
+KR GRGG G R R GG + GR
Sbjct: 202 SKRGGRGGRGGARGGRGGGARGGR 225
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 32.3 bits (70), Expect = 0.47
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +1
Query: 418 LQRNSGTITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASV 549
L R G I T + V LD V+D D+K+ F+EFG + S +
Sbjct: 294 LTRPEGDIMN--TTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKI 335
>At5g62440.1 68418.m07837 expressed protein
Length = 202
Score = 31.9 bits (69), Expect = 0.61
Identities = 20/53 (37%), Positives = 25/53 (47%)
Frame = +1
Query: 139 EFQIITMVDQIEMALDDIIKANKKTRIGGGAGRKFDANKRTGRGGGAGFRSNR 297
+F VDQI + L + +K G G GR +R GRGGG G R R
Sbjct: 151 DFSFRKCVDQI-LPLPENMKTPGANGNGHGGGRGGGGGRRGGRGGGRGGRFRR 202
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 31.9 bits (69), Expect = 0.61
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +1
Query: 448 GPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLXY 582
GP ++ V L + ++S ++EL FG LK + DR +G S Y
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGY 402
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 31.9 bits (69), Expect = 0.61
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +1
Query: 448 GPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLXY 582
GP ++ V L + ++S ++EL FG LK + DR +G S Y
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGY 402
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 31.9 bits (69), Expect = 0.61
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +1
Query: 448 GPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLXY 582
GP ++ V L + ++S ++EL FG LK + DR +G S Y
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGY 402
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 31.9 bits (69), Expect = 0.61
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +1
Query: 220 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 333
GGG GR+ +G GGG R G GR GG
Sbjct: 102 GGGGGRREGGGGYSGGGGGYSSRGGGGGSYGGGRREGG 139
Score = 30.3 bits (65), Expect = 1.9
Identities = 22/64 (34%), Positives = 28/64 (43%)
Frame = +1
Query: 142 FQIITMVDQIEMALDDIIKANKKTRIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGR 321
F +T D E A+ D I+ + G + +A R G GGG G R S G GR
Sbjct: 51 FGFVTFKD--EKAMKDAIEGMNGQDLDGRSITVNEAQSR-GSGGGGGHRGGGSYGGGGGR 107
Query: 322 NRGG 333
GG
Sbjct: 108 REGG 111
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 31.9 bits (69), Expect = 0.61
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +1
Query: 220 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 333
GGG GR+ +G GGG R G GR GG
Sbjct: 119 GGGGGRREGGGGYSGGGGGYSSRGGGGGSYGGGRREGG 156
Score = 29.1 bits (62), Expect = 4.3
Identities = 22/74 (29%), Positives = 30/74 (40%)
Frame = +1
Query: 142 FQIITMVDQIEMALDDIIKANKKTRIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGR 321
F +T D E A+ D I+ + G + +A R G GGG G R GG + G
Sbjct: 51 FGFVTFKD--EKAMKDAIEGMNGQDLDGRSITVNEAQSR-GSGGGGGHRGGGGGGYRSGG 107
Query: 322 NRGGITKSTNYSRG 363
G +Y G
Sbjct: 108 GGGYSGGGGSYGGG 121
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 31.5 bits (68), Expect = 0.81
Identities = 30/120 (25%), Positives = 48/120 (40%), Gaps = 3/120 (2%)
Frame = +1
Query: 184 DDIIKANKKTRIGGGAGRKFDANKRTGRGGGAGFR--SNRSGGVQRGRNRGGITKSTNYS 357
D ++ K G G K ++ TGR G GF ++ + ++ G ST
Sbjct: 167 DYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPM 226
Query: 358 R-GDVNSTWKHDMFNDFGERKLQRNSGTITTGPTKLLVSNLDFGVSDSDIKELFSEFGIL 534
R G + M + N+G T + V LD V+D ++K +F +FG L
Sbjct: 227 RIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGEL 286
>At5g04290.1 68418.m00422 KOW domain-containing transcription factor
family protein
Length = 1493
Score = 31.5 bits (68), Expect = 0.81
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 13/70 (18%)
Frame = +1
Query: 220 GGGA--GRKFDANKRTGR---GGGAGFRSNRSGGVQR-GRN---RGGIT----KSTNYSR 360
GGG+ G++ D + GGG GF R GG R GRN RGG + +S+++
Sbjct: 1309 GGGSSWGKQGDGGSKPWNEHSGGGRGFGERRGGGGFRGGRNQSGRGGRSFDGGRSSSWKT 1368
Query: 361 GDVNSTWKHD 390
+ +TWK D
Sbjct: 1369 DNQENTWKSD 1378
Score = 29.5 bits (63), Expect = 3.3
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Frame = +1
Query: 220 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKST--NYSRGDVNSTWKHDM 393
GGG+G + T G G +++ GG G+ GG S+ + G S+W
Sbjct: 1259 GGGSGSAWGKQNETSNGSSWGKQNDSGGGSSWGKQDGGGGGSSWGKQNDGGGGSSWGKQ- 1317
Query: 394 FNDFGERKLQRNSG 435
D G + +SG
Sbjct: 1318 -GDGGSKPWNEHSG 1330
>At3g04640.1 68416.m00497 glycine-rich protein predicted proteins,
Arabidopsis thaliana
Length = 159
Score = 31.5 bits (68), Expect = 0.81
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Frame = +1
Query: 166 QIEMALD-DIIKAN--KKTRI----GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRN 324
++E+ D D+I+AN K T + GGG GR GR G G S+R GG R
Sbjct: 49 EVELKPDGDVIEANLPKLTVVVKKGGGGGGRGGGGFGGGGRSFGGGGSSSRGGGGSSSRG 108
Query: 325 RGG 333
GG
Sbjct: 109 GGG 111
Score = 30.3 bits (65), Expect = 1.9
Identities = 18/47 (38%), Positives = 21/47 (44%)
Frame = +1
Query: 223 GGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRG 363
GG GR F + RGGG S+R GG R GG+ Y G
Sbjct: 85 GGGGRSFGGGGSSSRGGGGS--SSRGGGGSSSRG-GGLRPIPIYGGG 128
>At1g55250.1 68414.m06310 expressed protein weak similarity to PUMA1
[Parascaris univalens] GI:3068590
Length = 522
Score = 31.5 bits (68), Expect = 0.81
Identities = 14/43 (32%), Positives = 29/43 (67%)
Frame = +2
Query: 206 KRQGLEVVLEENLMQTKEQDVEAVLDFVATALVVYNEVEIVEA 334
++ GLE+ EE + ++ QD+++ +F+A A + E+E++EA
Sbjct: 452 EKNGLELETEEAIQDSERQDIKS--EFIAMASTLSKEMEMMEA 492
>At5g35980.1 68418.m04333 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 956
Score = 31.1 bits (67), Expect = 1.1
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Frame = +1
Query: 220 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQ-RGRNRGGITKSTNYS-RGDVNSTWKHDM 393
G G + +G+ G+ R GV+ R + +GG T ST YS + NS+ + +M
Sbjct: 691 GHGMDNFYQNEGYSGQFSGSPSRRQLDSGVKNRKQTQGGTTLSTGYSTHNNANSSLRSNM 750
Query: 394 FNDFGERKLQRNSGTITTGP 453
+N N T + P
Sbjct: 751 YNPSSTAHHLENPDTALSVP 770
>At5g05720.1 68418.m00629 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 451
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +1
Query: 454 TKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGR 570
TKL V N+ F + ++++LF+ FG +KS + GR
Sbjct: 351 TKLHVKNIAFEATMKEVRQLFTPFGQIKSVGLPERTKGR 389
>At4g23910.1 68417.m03439 expressed protein various predicted
proteins, Arabidopsis thaliana
Length = 198
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +1
Query: 166 QIEMALDDIIK-ANKKTRIGGGAGRKFDANKRTGRGGGAGFRSNRS 300
++ MALDDIIK A +KT + G + + NK G A R+N S
Sbjct: 18 KVAMALDDIIKLAKRKTNVNKGKKPRREKNKNQNFNGAA--RNNTS 61
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +1
Query: 454 TKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLXY 582
TKL V N+ F + ++++LFS FG +KS + G+ Y
Sbjct: 669 TKLHVKNIAFEATKRELRQLFSPFGQIKSMRLPKKNIGQYAGY 711
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 31.1 bits (67), Expect = 1.1
Identities = 22/67 (32%), Positives = 29/67 (43%)
Frame = +2
Query: 590 VVFERKADAVKAMKQYNGVPLDGRAMNIQLATSEINTLRPEARNRIGGASVGGTIRNNPK 769
V FE DA A+K +G LDG + ++LA + R GG GG+
Sbjct: 50 VEFEHSRDAEDAIKGRDGYNLDGCRLRVELAHGGRGQSSSDRRGGYGG---GGSGYGGGG 106
Query: 770 RGGGGIR 790
GGG R
Sbjct: 107 GGGGSAR 113
>At3g05220.2 68416.m00570 heavy-metal-associated domain-containing
protein similar to farnesylated protein 1 (GI:23304411)
{Hordeum vulgare subsp. spontaneum}; contains Pfam
profile PF00403: Heavy-metal-associated domain
Length = 478
Score = 31.1 bits (67), Expect = 1.1
Identities = 24/79 (30%), Positives = 31/79 (39%), Gaps = 4/79 (5%)
Frame = +1
Query: 205 KKTRIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQR----GRNRGGITKSTNYSRGDVN 372
KK + G G +K A K+ G GG GGVQ + GG TK + D++
Sbjct: 239 KKGKSGNGDEKK-SAGKKDGHGGNKVKSHGGGGGVQHYDSGPKKGGGGTKGGGHGGLDID 297
Query: 373 STWKHDMFNDFGERKLQRN 429
KH G K N
Sbjct: 298 ELMKHSKGGGGGGNKGNHN 316
>At3g05220.1 68416.m00569 heavy-metal-associated domain-containing
protein similar to farnesylated protein 1 (GI:23304411)
{Hordeum vulgare subsp. spontaneum}; contains Pfam
profile PF00403: Heavy-metal-associated domain
Length = 577
Score = 31.1 bits (67), Expect = 1.1
Identities = 24/79 (30%), Positives = 31/79 (39%), Gaps = 4/79 (5%)
Frame = +1
Query: 205 KKTRIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQR----GRNRGGITKSTNYSRGDVN 372
KK + G G +K A K+ G GG GGVQ + GG TK + D++
Sbjct: 338 KKGKSGNGDEKK-SAGKKDGHGGNKVKSHGGGGGVQHYDSGPKKGGGGTKGGGHGGLDID 396
Query: 373 STWKHDMFNDFGERKLQRN 429
KH G K N
Sbjct: 397 ELMKHSKGGGGGGNKGNHN 415
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 30.7 bits (66), Expect = 1.4
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Frame = +1
Query: 361 GDVNSTWKHDMFNDFGERKLQRNSGTITTG--PTK-LLVSNLDFGVSDSDIKELFSEFGI 531
GD+ S+ H GER + G + G P++ LLV N+ V D ++K LF +FG
Sbjct: 187 GDIFSSVSHRN----GERGGNNSVGELNRGEIPSRTLLVGNISSNVEDYELKVLFEQFGD 242
Query: 532 LKS 540
+++
Sbjct: 243 IQA 245
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 30.7 bits (66), Expect = 1.4
Identities = 21/56 (37%), Positives = 24/56 (42%)
Frame = +1
Query: 214 RIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRGDVNSTW 381
R GG R+ + R G GGG G S+ GG G G S Y G V S W
Sbjct: 557 RFGGRDFRREGSYSRGGGGGGGGGGSDYYGGGGYGGGGYGGAPSGGYGAG-VTSAW 611
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 30.7 bits (66), Expect = 1.4
Identities = 21/56 (37%), Positives = 24/56 (42%)
Frame = +1
Query: 214 RIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRGDVNSTW 381
R GG R+ + R G GGG G S+ GG G G S Y G V S W
Sbjct: 557 RFGGRDFRREGSYSRGGGGGGGGGGSDYYGGGGYGGGGYGGAPSGGYGAG-VTSAW 611
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +1
Query: 454 TKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRS 564
T L + NLD VS+ ++E F+EFG + S ++ D +
Sbjct: 201 TNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDEN 237
>At1g55040.1 68414.m06287 zinc finger (Ran-binding) family protein
contains Pfam PF00641: Zn-finger in Ran binding protein
and others; contains Prosite PS00018: EF-hand
calcium-binding domain; similar to Zinc finger protein
265 (Zinc finger, splicing) (Fragment). (SP:Q9R020){Mus
musculus}
Length = 849
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +1
Query: 223 GGAGRKFDANKRTGRGGGAGFRSNRSG-GVQRGRNRGGITKSTNYSRGDVNST 378
GG +FD GRG G+ SNR G G G NR G + + GD ++
Sbjct: 791 GGFDDEFDRKSSRGRGSGSFRGSNRGGRGGGGGGNRHGHSDGKDTDVGDFRNS 843
>At1g04800.1 68414.m00476 glycine-rich protein
Length = 200
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/42 (45%), Positives = 22/42 (52%)
Frame = +1
Query: 217 IGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITK 342
+ GGAG+ FD G GGAG GGV +G GGI K
Sbjct: 119 VDGGAGKGFDGGVGKGVDGGAG--KGFDGGVGKG-FEGGIGK 157
Score = 28.7 bits (61), Expect = 5.7
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = +1
Query: 220 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRG 363
GGGAG+ D G GGAG GG +G + GG+ K + G
Sbjct: 96 GGGAGKGVDGGFGKGVDGGAG--KGVDGGAGKGFD-GGVGKGVDGGAG 140
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 30.3 bits (65), Expect = 1.9
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +1
Query: 385 HDMFNDFGERKLQRNSGTITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYD 558
H +FN LQ + G + K+ V L V++++ K+ F++FG++ V YD
Sbjct: 13 HVVFNK-SNSSLQGSPGP--SNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYD 67
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 30.3 bits (65), Expect = 1.9
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +1
Query: 385 HDMFNDFGERKLQRNSGTITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYD 558
H +FN LQ + G + K+ V L V++++ K+ F++FG++ V YD
Sbjct: 86 HVVFNK-SNSSLQGSPGP--SNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYD 140
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 30.3 bits (65), Expect = 1.9
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +1
Query: 385 HDMFNDFGERKLQRNSGTITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYD 558
H +FN LQ + G + K+ V L V++++ K+ F++FG++ V YD
Sbjct: 86 HVVFNK-SNSSLQGSPGP--SNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYD 140
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 442 TTGPTKLLVSNLDFGVSDSDIKELFSEFGILK 537
++GP+ LL+ NL +D+++ F FG LK
Sbjct: 43 SSGPSGLLIRNLPLDARPNDLRDSFERFGPLK 74
>At4g30460.1 68417.m04325 glycine-rich protein
Length = 162
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = +1
Query: 220 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRG 363
G G+G + + + G GGG G GG RG GG Y G
Sbjct: 104 GSGSGGRSGSGRGRGSGGGGGHGGGGGGGGGRG-GGGGSGNGEGYGEG 150
>At4g16830.1 68417.m02540 nuclear RNA-binding protein (RGGA)
identical to nuclear RNA binding protein GI:6492264 from
[Arabidopsis thaliana]
Length = 355
Score = 30.3 bits (65), Expect = 1.9
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Frame = +1
Query: 187 DIIKANKKTRIGGGAGRKFDANKRTGRGGG-AGFRSNRSGGVQRGR----NRGGITKSTN 351
D+ K++ + R GGGA R + G GGG G SN G +R R R G + ++
Sbjct: 103 DVSKSSYERRGGGGAPRGSFRGEGGGPGGGRRGGFSNEGGDGERPRRAFERRSGTGRGSD 162
Query: 352 YSR-GDVNSTW 381
+ R G W
Sbjct: 163 FKRDGSGRGNW 173
>At2g15780.1 68415.m01809 glycine-rich protein similar to Blue
copper protein precursor (SP:Q41001) {Pisum sativum};
contains a Pfam PF02298: Plastocyanin-like domain
related to blue copper-binding protein; contains a
domain related to blue copper-binding protein
Length = 257
Score = 30.3 bits (65), Expect = 1.9
Identities = 21/72 (29%), Positives = 31/72 (43%)
Frame = +1
Query: 220 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRGDVNSTWKHDMFN 399
G G G + + + G G GF S+R+G G GG+ +T +S G S W N
Sbjct: 55 GWGQGSNYSSGSASTPGSGWGFGSSRNGS-GWGWGWGGVPNNT-HSSGSGGSGWGMGPNN 112
Query: 400 DFGERKLQRNSG 435
++ SG
Sbjct: 113 NYSSGSGGSGSG 124
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 29.9 bits (64), Expect = 2.5
Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +1
Query: 220 GGGAGRKFDANKRTGRG--GGAGFRSNRSGGVQRGRNRGGITKSTNYSRGDVNST 378
GGG G ++ R+G G GG G S RSGG G G S+ YS G S+
Sbjct: 517 GGGYGSYGSSSGRSGGGSYGGYGGSSGRSGG-GGGSYGGSGGSSSRYSGGSDRSS 570
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +1
Query: 454 TKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRS 573
T + V NL V+D + LFS++G + S V D GRS
Sbjct: 202 TNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRS 241
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +1
Query: 454 TKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRS 573
+ L V NL ++++ ++E+F +G + SA V +GRS
Sbjct: 304 SNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRS 343
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 29.9 bits (64), Expect = 2.5
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = +1
Query: 220 GGGAGRKFDANKRTGR--GGGAGFRSNRSGGVQRGRNRGGITKSTNYSRGDVNSTWKHDM 393
GG AG +G GGG G+ SN GG G GG+ S N+++G + D
Sbjct: 172 GGNAGGYGGNPPYSGNAVGGGGGYGSNFGGGGGYG-VAGGVGGSENFAQGSSTNAGFDDK 230
Query: 394 F 396
F
Sbjct: 231 F 231
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 29.9 bits (64), Expect = 2.5
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +1
Query: 457 KLLVSNLDFGVSDSDIKELFSEFGILKSASV 549
KL V L VS+++++ LFSE+G +K +
Sbjct: 110 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQI 140
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 29.9 bits (64), Expect = 2.5
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +1
Query: 457 KLLVSNLDFGVSDSDIKELFSEFGILKSASV 549
KL V L VS+++++ LFSE+G +K +
Sbjct: 101 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQI 131
>At5g33390.1 68418.m03985 glycine-rich protein similar to nuclear
antigen EBNA-1 (GI:3342234) {Cercopithecine herpesvirus
15}
Length = 118
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Frame = +1
Query: 220 GGGAGRKFDANKRTGRGG--GAGFRSNRSGGVQRGRNRGGITKSTNYSRGD 366
G G+G +G G G+G + SGG GR GG RGD
Sbjct: 12 GSGSGGSVSGGSGSGGSGSGGSGSGGSGSGGRANGRGNGGRGSGRGGGRGD 62
>At4g27330.1 68417.m03921 sporocyteless (SPL) identical to
sporocyteless SPL (MADS-box related protein)
[Arabidopsis thaliana] gi|5566240|gb|AAD45344
Length = 314
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +2
Query: 659 RAMNIQLATSEINTLRPEARNRIGGAS-VGGTIRNNPKRGGGGIR 790
RA ++ +++ IN EA N G G + NP+ G GG++
Sbjct: 233 RAASVSASSTTINPYFNEATNHTGPMEEFGSYMEGNPRNGSGGVK 277
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 457 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRS 564
K+ V L V++SD K F +FG V YD +
Sbjct: 109 KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHN 144
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 457 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRS 564
K+ V L V++SD K F +FG V YD +
Sbjct: 109 KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHN 144
>At1g68640.1 68414.m07843 bZIP family transcription factor
(PERIANTHIA) identical to transcription factor
PERIANTHIA GB:AAD19660 GI:4378757 from [Arabidopsis
thaliana]
Length = 452
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Frame = +1
Query: 241 FDANKRTGRGGGAGFRSNRSGGVQRGRNRGGI-----TKSTNYSRGDVNSTW 381
FD G GGG G R GG + + G + T+ G+VNS+W
Sbjct: 62 FDTVMDCGGGGGGGLRERLEGGEEECLDTGQLVYQKGTRLVGGGVGEVNSSW 113
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +1
Query: 448 GPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLXY 582
GP ++ V L + ++ I+EL FG L+ ++ DR +G S Y
Sbjct: 373 GPDRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGY 418
>At1g36675.1 68414.m04563 glycine-rich protein
Length = 268
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Frame = +1
Query: 235 RKFDANKRT---GRGGGAGFRSNRSGGVQRGRNRGG 333
++F+A K+ G G G G R R GG GR GG
Sbjct: 185 KRFEATKKEDGRGNGRGGGSRDGRGGGSGDGRGIGG 220
>At5g45720.1 68418.m05621 hypothetical protein
Length = 900
Score = 29.1 bits (62), Expect = 4.3
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Frame = +1
Query: 127 KKYLEFQIITMVDQIEMA---LDDIIKANKKTRIGGGAGRKFDANKRTGRGGGAGFRSNR 297
KK E + T+ DQ+ DD++ N + R G RKF +R GR R N
Sbjct: 146 KKVNEAIVKTLSDQLNEVGGDSDDLVSCNVRPRGDGCRRRKFRGTRRAGR--AVNVRDNA 203
Query: 298 SG 303
+G
Sbjct: 204 AG 205
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +1
Query: 220 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRG 363
GGG G + + GGG G+ GG G G +S Y G
Sbjct: 88 GGGGGGRGGSGGGYRSGGGGGYSGGGGGGYSGGGGGGYERRSGGYGSG 135
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 457 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRS 573
+ V L + +D D++ FS+FG + + + DR SGRS
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRS 46
Score = 28.3 bits (60), Expect = 7.6
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +1
Query: 220 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 333
GGG G + G GGG G R GG + G GG
Sbjct: 119 GGGGGGYERRSGGYGSGGGGGGRGYGGGGRREGGGYGG 156
>At1g76965.1 68414.m08961 glycine-rich protein
Length = 158
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +1
Query: 253 KRTGRGGGAGF-RSNRSGGVQRGRNRGGITKSTNYSRGDVNS 375
K +GRGGG GF S S + G GG T Y G + S
Sbjct: 23 KVSGRGGGGGFVGSGNSPSIGSGYFGGGGNPGTGYMGGGIPS 64
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +1
Query: 442 TTGP-TKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR 561
++GP TKL VS L F ++ +++ F +FG L ++ D+
Sbjct: 72 SSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDK 112
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +1
Query: 460 LLVSNLDFGVSDSDIKELFSEFGILKSASVHYD-RSGRSLXY 582
L V L+ D D+ +FS FG + SA V D ++G SL Y
Sbjct: 245 LFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCY 286
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 29.1 bits (62), Expect = 4.3
Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +1
Query: 214 RIGGGAGRKFDANK-RTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRG 363
R G G GR D + R G GGG G R GG RGR G + ++ RG
Sbjct: 497 RFGSGGGRGRDGGRGRFGSGGGRG----RDGG--RGRFGSGGGRGSDRGRG 541
>At1g31280.1 68414.m03828 PAZ domain-containing protein / piwi
domain-containing protein similar to SP|O04379 Argonaute
protein (AGO1) {Arabidopsis thaliana}, SP|Q9XGW1 PINHEAD
protein (ZWILLE protein) {Arabidopsis thaliana};
contains Pfam profiles PF02171: Piwi domain, PF02170:
PAZ domain
Length = 1013
Score = 29.1 bits (62), Expect = 4.3
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Frame = +1
Query: 220 GGGAGRKFDANKRTGRG---GGAGFRSNRS---GGVQRGRNRGGITKSTNYSRG 363
GG G + D R GRG GG G R GG ++GR RG N +G
Sbjct: 4 GGYRGGRGDGRGRGGRGYGGGGGGGEQGRDRGYGGGEQGRGRGSERGGGNRGQG 57
>At1g07135.1 68414.m00759 glycine-rich protein
Length = 155
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = +1
Query: 220 GGGAGRKFDANKRTG---RGGGAGFRSNRSGGVQRG 318
GGG G + R+G RGGG G S+RS +RG
Sbjct: 67 GGGGGGRGGGGARSGGRSRGGGGGSSSSRSRDWKRG 102
>At5g46730.1 68418.m05757 glycine-rich protein
Length = 290
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/38 (34%), Positives = 15/38 (39%)
Frame = +1
Query: 220 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 333
GGGA + G GGG + GG G GG
Sbjct: 244 GGGAAGGYGGGGGGGEGGGGSYGGEHGGGSGGGHGGGG 281
>At5g20250.2 68418.m02411 raffinose synthase family protein / seed
imbibition protein, putative (din10) similar to seed
imbibition protein GB:AAA32975 GI:167100 from [Hordeum
vulgare]; contains nonconsensus AT donor splice site at
intron 1; contains Pfam profile PF05691: Raffinose
synthase or seed imbibition protein Sip1; identical to
cDNA seed imbibition protein (din10) partial cds
GI:10834551
Length = 749
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +1
Query: 301 GGVQRGRNRGGITKSTNYSRGDVNS--TWKHDM 393
GGV+ G G + K N S+G V + TWK D+
Sbjct: 315 GGVRPGEEYGSVMKYPNMSKGVVENDPTWKTDV 347
>At5g20250.1 68418.m02410 raffinose synthase family protein / seed
imbibition protein, putative (din10) similar to seed
imbibition protein GB:AAA32975 GI:167100 from [Hordeum
vulgare]; contains nonconsensus AT donor splice site at
intron 1; contains Pfam profile PF05691: Raffinose
synthase or seed imbibition protein Sip1; identical to
cDNA seed imbibition protein (din10) partial cds
GI:10834551
Length = 844
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +1
Query: 301 GGVQRGRNRGGITKSTNYSRGDVNS--TWKHDM 393
GGV+ G G + K N S+G V + TWK D+
Sbjct: 410 GGVRPGEEYGSVMKYPNMSKGVVENDPTWKTDV 442
>At5g04440.1 68418.m00441 expressed protein
Length = 255
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = -1
Query: 841 TTTSFXVSPTCSTIALISNSSTSSFRIVSYSTPHTR 734
+++SF SP S++A ++SSTS R+ S STP R
Sbjct: 35 SSSSFDESPKPSSLA--TSSSTSPIRVSSSSTPKAR 68
>At4g29240.1 68417.m04182 leucine-rich repeat family protein /
extensin family protein contains Pfam PF00560: Leucine
Rich Repeat domains; similar to leucine-rich
repeat/extensin 1 (GI:13809918) [Arabidopsis thaliana]
Length = 415
Score = 28.7 bits (61), Expect = 5.7
Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Frame = +1
Query: 181 LDDIIKANKKTRIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSR 360
L +++ + +GGG G G GGG G GG G NR + S+ +R
Sbjct: 20 LGGLVQTDASFGVGGGVGVGIG-----GGGGGGGGGVWVGGGYNNGGNRNAVPGSSAPNR 74
Query: 361 GDVNS--TWKHDMFND 402
N+ WK M D
Sbjct: 75 VAYNALQVWKSAMRED 90
>At3g56250.1 68416.m06251 expressed protein
Length = 222
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +1
Query: 412 RKLQRNSGTITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSAS 546
R++ + + + P++ S D GVSD D E +S + + + AS
Sbjct: 84 RRMSADLASPASAPSRPQTSRSDMGVSDKDFTEPWSVYTVRRKAS 128
>At3g26400.1 68416.m03292 eukaryotic translation initiation factor
4B, putative/ eIF-4B, putative similar to eukaryotic
initiation factor 4B [Arabidopsis thaliana] GI:6739518
Length = 532
Score = 28.7 bits (61), Expect = 5.7
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Frame = +1
Query: 181 LDDIIKANKKT--RIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGI---TKS 345
LDD ++ +K R G GAGR ++RT G+ + +R R+RG + +
Sbjct: 446 LDDKVRFRQKPVERPGSGAGRTGTYSERTHSRAGSIDETRSFESTERPRSRGAVDAWVRP 505
Query: 346 TNYSRGDVNSTWKHDMFND 402
N R + T + F++
Sbjct: 506 ANEQRRNFQGTKERGFFSN 524
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +1
Query: 445 TGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLXY 582
T TK+ V NL + + D++ F +FG + A+V + GRS Y
Sbjct: 9 TRVTKIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGY 55
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 28.7 bits (61), Expect = 5.7
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +1
Query: 427 NSGTITTGPTKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRSLXY 582
N+ T T TK+ V L + ++ F +FG + A V D+ +GRS Y
Sbjct: 13 NNNTTDTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGY 65
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 466 VSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLXY 582
V N D+ SD++ LFS+FG +K + +SG + Y
Sbjct: 6 VGNFDYDTRHSDLERLFSKFGRVKRVDM---KSGYAFVY 41
>At2g28670.1 68415.m03485 disease resistance-responsive family
protein / fibroin-related contains similarity to silk
fibroin heavy chain [Bombyx mori] gi|765323|gb|AAB31861;
contains disease resistance response protien domain
Pfam:FP03018
Length = 447
Score = 28.7 bits (61), Expect = 5.7
Identities = 17/40 (42%), Positives = 19/40 (47%)
Frame = +1
Query: 211 TRIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRG 330
T IG GAG + TG G GAG S+ SG G G
Sbjct: 45 TGIGFGAGTGSSGSGSTGFGFGAGSGSSGSGSTGSGLGAG 84
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +1
Query: 466 VSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRS 573
V LD + D+ ++FS+FG + + + YDR +G+S
Sbjct: 11 VRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKS 47
>At1g69250.2 68414.m07935 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 389
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +1
Query: 412 RKLQRNSGTITTGP-TKLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDRSGRSLXY 582
+ +++N + P T + V+NL + ELF +FG +K + RS R L +
Sbjct: 265 KSIKKNDQKVIEVPGTSIFVANLPLNAMPPQLFELFKDFGPIKENGIQV-RSSRVLIF 321
>At1g36940.1 68414.m04604 hypothetical protein
Length = 181
Score = 28.7 bits (61), Expect = 5.7
Identities = 28/83 (33%), Positives = 35/83 (42%)
Frame = +1
Query: 43 KNFAFLSPSTWEGRVLRGXXXXXXXXS*KKYLEFQIITMVDQIEMALDDIIKANKKTRIG 222
KN +F +P+T R RG + K I ++D E LD + KKT
Sbjct: 93 KNLSFSAPTTTTTRTSRGRIRKEEFGNKK-------IDVIDVAE--LDPPLPVVKKTH-D 142
Query: 223 GGAGRKFDANKRTGRGGGAGFRS 291
GGAG K N R GG RS
Sbjct: 143 GGAGDKAAENLWKRRSGGCQLRS 165
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 28.3 bits (60), Expect = 7.6
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +1
Query: 214 RIGGGAGRKFDANKRTGRGGGAG 282
R GGG G +F GRGG G
Sbjct: 644 RFGGGGGNRFGGGGGRGRGGSGG 666
>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 28.3 bits (60), Expect = 7.6
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +1
Query: 220 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 333
G G + G GGG G R GG Q G +RGG
Sbjct: 40 GASGGGSYGGRGGYGGGGGRGNRGGGGGGYQ-GGDRGG 76
>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 28.3 bits (60), Expect = 7.6
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +1
Query: 220 GGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 333
G G + G GGG G R GG Q G +RGG
Sbjct: 40 GASGGGSYGGRGGYGGGGGRGNRGGGGGGYQ-GGDRGG 76
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 457 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRS 573
+ V L + +D D++ FS+FG + + + DR SGRS
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRS 46
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 457 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRS 573
+ V L + +D D++ FS+FG + + + DR SGRS
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRS 46
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 457 KLLVSNLDFGVSDSDIKELFSEFGILKSASVHYDR-SGRS 573
+ V L + +D D++ FS+FG + + + DR SGRS
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRS 46
>At4g25630.1 68417.m03691 fibrillarin 2 (FIB2) identical to
fibrillarin 2 GI:9965655 from [Arabidopsis thaliana]
Length = 320
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = +1
Query: 262 GRGGGAGFRSNRSGGVQRGRNRGG 333
GRGGG GF G RG RGG
Sbjct: 38 GRGGGRGFSDRGGRGRGRGPPRGG 61
>At3g10040.1 68416.m01204 expressed protein est match
Length = 431
Score = 28.3 bits (60), Expect = 7.6
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Frame = +1
Query: 226 GAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRG-DVNSTWKHDMFND 402
G DA K+TG GGG G GG+ + + + +G V+ D FND
Sbjct: 126 GLNDPVDAKKKTGGGGGGG----GGGGMLQKKGKWKSVSRAMVEKGFSVSPQQCEDKFND 181
Query: 403 FGER 414
+R
Sbjct: 182 LNKR 185
>At3g06130.1 68416.m00704 heavy-metal-associated domain-containing
protein contains Pfam heavy metal associated domain
PF00403
Length = 473
Score = 28.3 bits (60), Expect = 7.6
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Frame = +1
Query: 190 IIKANKKTRIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRG---RNRGG 333
++ A K + GG + GGGAG GG + G +N+GG
Sbjct: 239 MMNAQKNANLAGGPAKNGGKGAPAAGGGGAGGGKGAGGGAKGGPGNQNQGG 289
>At2g26700.1 68415.m03203 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 525
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = -1
Query: 838 TTSFXVSPTCSTIALISNSSTSSFRIVSYSTPH 740
++SF SP+CS+I+ +SN +S+ + S PH
Sbjct: 32 SSSFTASPSCSSISHLSNHGLNSY---NQSKPH 61
>At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /
glycine-rich protein (GRP2) identical to Glycine-rich
protein 2b (AtGRP2b) [Arabidopsis thaliana]
SWISS-PROT:Q38896; contains Pfam domains PF00313:
'Cold-shock' DNA-binding domain and PF00098: Zinc
knuckle
Length = 201
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = +1
Query: 205 KKTRIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGG 333
K + G G N +G GG +G R GG RG RGG
Sbjct: 74 KAIEVSGPDGAPVQGN--SGGGGSSGGRGGFGGGGGRGGGRGG 114
>At1g72080.1 68414.m08332 hypothetical protein
Length = 243
Score = 28.3 bits (60), Expect = 7.6
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Frame = +1
Query: 142 FQIITMVDQIEMALDD--IIKANKKTRIGGGAGRKFDANKRTGRGGGAGFRSNRSGGVQR 315
F I + + M ++ I ++ R G G + R GRG G G R G R
Sbjct: 85 FATINTEEHLTMQIESPSTIINTEERRAGDDDGSRSRGRGR-GRGRGRGRGRGRGRGRGR 143
Query: 316 GRNRGGITKSTNYSRG 363
GRNR ++S ++S G
Sbjct: 144 GRNRSR-SRSPSHSNG 158
>At1g20220.1 68414.m02525 expressed protein
Length = 315
Score = 28.3 bits (60), Expect = 7.6
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = +1
Query: 223 GGAGRKFDANKRTGRGGGAGFRSNRSGGVQRGRNRGGITKSTNYSRG 363
GG G + N+ G G G R SG V N GG+ + +Y RG
Sbjct: 186 GGRGNGYVNNEYDDGGRGRGGRG--SGYVNNEYNDGGMEQDRSYGRG 230
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,629,876
Number of Sequences: 28952
Number of extensions: 365955
Number of successful extensions: 1870
Number of sequences better than 10.0: 104
Number of HSP's better than 10.0 without gapping: 1299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1751
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2188225800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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