Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_L11
(971 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ... 64 5e-09
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE... 56 2e-06
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ... 53 1e-05
UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ... 52 3e-05
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru... 45 0.003
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi... 44 0.006
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma... 41 0.055
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob... 40 0.096
UniRef50_A6NX90 Cluster: Putative uncharacterized protein; n=1; ... 38 0.29
UniRef50_UPI00015C640B Cluster: hypothetical protein CKO_pCKO2p0... 35 3.6
UniRef50_A6DNS7 Cluster: Probable ECF sigma factor; n=1; Lentisp... 34 6.3
UniRef50_A4Q8I4 Cluster: MobA protein; n=1; Listonella anguillar... 34 6.3
UniRef50_A2SSD8 Cluster: Putative uncharacterized protein; n=1; ... 34 6.3
UniRef50_Q8GUF1 Cluster: Reverse transcriptase; n=1; Cicer ariet... 33 8.3
>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
root|Rep: Putative uncharacterized protein - Escherichia
coli
Length = 61
Score = 64.1 bits (149), Expect = 5e-09
Identities = 38/57 (66%), Positives = 39/57 (68%)
Frame = -3
Query: 543 RGAEPMEKRQQRGLFTVPGLLLAFCSHVLSCVIPLILWITVLPPLSELIPLAAAERP 373
RGAEPMEKR + L V LL CS L PLILWITVLPPLSEL PLAA ERP
Sbjct: 4 RGAEPMEKRLRCWLLPVLCFLLT-CSFRL---YPLILWITVLPPLSELTPLAAVERP 56
>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
Myxococcus xanthus
Length = 486
Score = 55.6 bits (128), Expect = 2e-06
Identities = 31/54 (57%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Frame = +1
Query: 286 CINESANARGEAVCVLGALPLPRSLTRCARSFGCGERYQL-TQRR*YGYPQNQG 444
CI + A AR EAV VL ALPL RS TRC RS GCG + R YG PQ QG
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQG 319
>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
Escherichia coli|Rep: Putative uncharacterized protein -
Escherichia coli
Length = 147
Score = 52.8 bits (121), Expect = 1e-05
Identities = 23/33 (69%), Positives = 26/33 (78%)
Frame = +1
Query: 310 RGEAVCVLGALPLPRSLTRCARSFGCGERYQLT 408
R +C G +PLPRSLTR ARSFGCGERY+LT
Sbjct: 26 RVSRICDTGDIPLPRSLTRYARSFGCGERYRLT 58
Score = 39.9 bits (89), Expect = 0.096
Identities = 17/21 (80%), Positives = 18/21 (85%)
Frame = +3
Query: 546 TSITKIDAQVRGGETRQDYKD 608
TSI K DAQ+ GGETRQDYKD
Sbjct: 92 TSIAKSDAQISGGETRQDYKD 112
>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
root|Rep: Putative uncharacterized protein - Salmonella
typhimurium
Length = 127
Score = 51.6 bits (118), Expect = 3e-05
Identities = 29/48 (60%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Frame = +3
Query: 546 TSITKIDAQVRGGETRQDYKDTGVSXSXXRXPSTXXXXRP--VSDPCP 683
TSITKIDAQVRGGETRQDYKDT PS RP + D CP
Sbjct: 24 TSITKIDAQVRGGETRQDYKDT--RRFPLEAPSCALLFRPCRLPDTCP 69
Score = 44.4 bits (100), Expect = 0.004
Identities = 17/22 (77%), Positives = 19/22 (86%)
Frame = +1
Query: 694 NTCPPFSLREAWRFLIXHAXAV 759
+TCPPFSLREAWRFLI HA +
Sbjct: 66 DTCPPFSLREAWRFLIAHAVGI 87
>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
(SV40)
Length = 364
Score = 45.2 bits (102), Expect = 0.003
Identities = 19/19 (100%), Positives = 19/19 (100%)
Frame = +2
Query: 89 DPDMIRYIDEFGQTTTRMQ 145
DPDMIRYIDEFGQTTTRMQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364
>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
organisms|Rep: Predicted protein - Nematostella
vectensis
Length = 97
Score = 44.0 bits (99), Expect = 0.006
Identities = 19/22 (86%), Positives = 20/22 (90%)
Frame = +3
Query: 546 TSITKIDAQVRGGETRQDYKDT 611
TSITK DAQ+ GGETRQDYKDT
Sbjct: 60 TSITKSDAQISGGETRQDYKDT 81
>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
Magnoliophyta|Rep: Putative reverse transcriptase -
Zingiber officinale (Ginger)
Length = 49
Score = 40.7 bits (91), Expect = 0.055
Identities = 16/17 (94%), Positives = 17/17 (100%)
Frame = +2
Query: 284 SALMNRPTRGERRFAYW 334
+ALMNRPTRGERRFAYW
Sbjct: 25 AALMNRPTRGERRFAYW 41
>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
Enterobacteriaceae|Rep: Lactose operon repressor -
Escherichia coli (strain K12)
Length = 360
Score = 39.9 bits (89), Expect = 0.096
Identities = 19/24 (79%), Positives = 21/24 (87%)
Frame = -1
Query: 356 ERGSGRAPNTQTASPRALADSLMQ 285
+R + APNTQTASPRALADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348
>UniRef50_A6NX90 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 37
Score = 38.3 bits (85), Expect = 0.29
Identities = 20/27 (74%), Positives = 20/27 (74%), Gaps = 2/27 (7%)
Frame = +3
Query: 675 PCPLYP--EYLSAFLPSGSVALSHXSR 749
P P P YLSAFLPSGSVALSH SR
Sbjct: 4 PVPTLPLTGYLSAFLPSGSVALSHSSR 30
>UniRef50_UPI00015C640B Cluster: hypothetical protein
CKO_pCKO2p07168; n=1; Citrobacter koseri ATCC
BAA-895|Rep: hypothetical protein CKO_pCKO2p07168 -
Citrobacter koseri ATCC BAA-895
Length = 99
Score = 34.7 bits (76), Expect = 3.6
Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = -3
Query: 759 NSXGVXYEKAPRFPKGERRTGIPGK-AGKGRK 667
++ V YEKAPRFPKG++ + GK G+ R+
Sbjct: 44 DTSSVSYEKAPRFPKGKKAEQVSGKRQGRNRR 75
>UniRef50_A6DNS7 Cluster: Probable ECF sigma factor; n=1;
Lentisphaera araneosa HTCC2155|Rep: Probable ECF sigma
factor - Lentisphaera araneosa HTCC2155
Length = 201
Score = 33.9 bits (74), Expect = 6.3
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +2
Query: 167 EICDAIALFVTIISCNKQVNNNNCIHFMFQVQGEVWEVFSALMNRPTRGERRFAYW 334
+ DA F+ I N +N+++C + +V +VWE + P RG +F YW
Sbjct: 32 DFSDAYRRFIYIALRNNGLNHHDCEEVVQRVMIKVWEKIARFKYNPGRG--KFRYW 85
>UniRef50_A4Q8I4 Cluster: MobA protein; n=1; Listonella anguillarum
serovar O2|Rep: MobA protein - Listonella anguillarum
serovar O2
Length = 548
Score = 33.9 bits (74), Expect = 6.3
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = -2
Query: 202 NGYK*SNSITNFTNKAFFSLHSSCG-LSKLINVSYHVWIQLTLXKGRSAAAVPTFKS 35
NG+K N + + L++ CG L +L+ + + + LT+ +GR A P+ +S
Sbjct: 488 NGFKAGNGVERAVTNDYDELNAKCGHLDRLLRETDPIGLTLTMEQGRKADPTPSVRS 544
>UniRef50_A2SSD8 Cluster: Putative uncharacterized protein; n=1;
Methanocorpusculum labreanum Z|Rep: Putative
uncharacterized protein - Methanocorpusculum labreanum
(strain ATCC 43576 / DSM 4855 / Z)
Length = 109
Score = 33.9 bits (74), Expect = 6.3
Identities = 21/55 (38%), Positives = 28/55 (50%)
Frame = -2
Query: 247 KMNAIVVVNLFIAAYNGYK*SNSITNFTNKAFFSLHSSCGLSKLINVSYHVWIQL 83
+MNA V + FIAA + +T + AFF L S G ++VSY VW L
Sbjct: 27 RMNAWVDLAAFIAAV-----ATCVTGYVLWAFFPLGSGRGAMNFLDVSYQVWYDL 76
>UniRef50_Q8GUF1 Cluster: Reverse transcriptase; n=1; Cicer
arietinum|Rep: Reverse transcriptase - Cicer arietinum
(Chickpea) (Garbanzo)
Length = 37
Score = 33.5 bits (73), Expect = 8.3
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +2
Query: 419 NTVIHRIRGITQERTCE 469
NTVIH +GITQERTCE
Sbjct: 21 NTVIHXNQGITQERTCE 37
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 804,138,791
Number of Sequences: 1657284
Number of extensions: 14590950
Number of successful extensions: 33581
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 32343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33574
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 90631794594
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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