Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_L10
         (974 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    25   1.2  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   2.7  

>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 11/35 (31%), Positives = 14/35 (40%)
 Frame = +1

Query: 751 GGGXPPXXXXKXSXVXPPRXPPXSXPPXFXPPPXN 855
           G   PP      + +  P+ PP   PP F P   N
Sbjct: 161 GPALPPAGFLCNNYLPLPQVPPLPLPPIFAPTMIN 195


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 11/35 (31%), Positives = 13/35 (37%)
 Frame = +1

Query: 751 GGGXPPXXXXKXSXVXPPRXPPXSXPPXFXPPPXN 855
           G   PP      +    P+ PP   PP F P   N
Sbjct: 161 GPALPPTGFLCNNYPPLPQVPPLPLPPIFPPTMIN 195



 Score = 22.2 bits (45), Expect = 6.3
 Identities = 12/37 (32%), Positives = 13/37 (35%)
 Frame = +3

Query: 735 PPXXXRGGXPPPXGXKXXPGXPPPXPPXLXPPXVXPP 845
           P     G   PP G       P P  P L  P + PP
Sbjct: 155 PSIIDPGPALPPTGFLCNNYPPLPQVPPLPLPPIFPP 191


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,449
Number of Sequences: 336
Number of extensions: 2868
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 27616611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)