Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_L10
(974 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 34 0.026
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 33 0.046
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 32 0.14
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.19
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.25
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 30 0.43
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 29 0.99
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 28 1.7
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 28 2.3
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 26 9.3
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 34.3 bits (75), Expect = 0.026
Identities = 18/43 (41%), Positives = 18/43 (41%)
Frame = -2
Query: 883 GGKGXXGXXG*XGGGXTXGGXXXGGXGGGXPGXXXXPXGGGXP 755
G G G G GGG G GG GGG G P G G P
Sbjct: 229 GPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGGP 271
Score = 33.9 bits (74), Expect = 0.035
Identities = 22/63 (34%), Positives = 22/63 (34%)
Frame = -2
Query: 922 GGDXGXPXPXSQRGGKGXXGXXG*XGGGXTXGGXXXGGXGGGXPGXXXXPXGGGXPPRXX 743
GG G P GG G G G GG G GG GG G P G G
Sbjct: 195 GGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGF 254
Query: 742 XGG 734
GG
Sbjct: 255 GGG 257
Score = 33.9 bits (74), Expect = 0.035
Identities = 24/67 (35%), Positives = 24/67 (35%), Gaps = 1/67 (1%)
Frame = -2
Query: 922 GGDXGXPXPXSQRGGKGXXGXX-G*XGGGXTXGGXXXGGXGGGXPGXXXXPXGGGXPPRX 746
GG G GG G G G GG G GG GGG G P G G P
Sbjct: 208 GGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGP-G 266
Query: 745 XXGGXFW 725
GG W
Sbjct: 267 GHGGPGW 273
Score = 26.2 bits (55), Expect = 7.0
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = -1
Query: 572 GGGKXXPPPEXXGARGXFGGXG 507
GGG PPP G G FGG G
Sbjct: 194 GGGSGGPPP-GPGGFGGFGGFG 214
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 33.5 bits (73), Expect = 0.046
Identities = 35/129 (27%), Positives = 38/129 (29%), Gaps = 4/129 (3%)
Frame = +1
Query: 508 PXPPKXPLAPXXSGGGXXFPPPXGGFXXSLQPRGPPXQKXFSQXXPPXXQTPXNRXRXGX 687
P P P P S G PPP S + P P P +
Sbjct: 1044 PIPTSTPPVPKSSSGAPSAPPPVPA--PSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVA- 1100
Query: 688 XPQAPPPXLLXXXKXFPPXXFGGGXPPXXXXKXSXVXPPRXPPXSXPPXFXP----PPXN 855
P P P + PP G PP K S PP P PP P PP
Sbjct: 1101 APPVPKPSV-----AVPPVPAPSGAPP--VPKPSVAAPPVPVPSGAPPVPKPSVAAPPVP 1153
Query: 856 XXXXAPPXP 882
APP P
Sbjct: 1154 APSGAPPVP 1162
Score = 31.1 bits (67), Expect = 0.25
Identities = 37/137 (27%), Positives = 40/137 (29%), Gaps = 12/137 (8%)
Frame = +1
Query: 508 PXPPKXPLAPXXSGGGXXFPPPXGGFXXSLQPRG-PPXQKXFSQXXP---PXXQTPXNRX 675
P P P P S P P P G PP K P P P +
Sbjct: 1086 PAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKP 1145
Query: 676 RXGXXPQAPP---PXLLXXXKXFPPXXF-GGGXPPXXXXKXSXVXPPRXPPXSXPPXFXP 843
P P P + PP G PP K + PP PP PP P
Sbjct: 1146 SVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVP--KPAAGVPPVPPPSEAPPVPKP 1203
Query: 844 ----PPXNXXXXAPPXP 882
PP APP P
Sbjct: 1204 SVGVPPVPPPSTAPPVP 1220
Score = 27.5 bits (58), Expect = 3.0
Identities = 16/49 (32%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Frame = +3
Query: 738 PXXXRGGXPPPXGXKXXPGXPPPXP-PXLXPPXVXPPPX*PXXPCXPXP 881
P G P P P PPP P + P V PP P P P
Sbjct: 1172 PAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVP 1220
Score = 26.6 bits (56), Expect = 5.3
Identities = 15/53 (28%), Positives = 18/53 (33%)
Frame = +3
Query: 765 PPXGXKXXPGXPPPXPPXLXPPXVXPPPX*PXXPCXPXPPLWEXGXGXPLSPP 923
PP P P P PP P P PP+ + G P +PP
Sbjct: 1012 PPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPP 1064
Score = 25.8 bits (54), Expect = 9.3
Identities = 15/44 (34%), Positives = 15/44 (34%)
Frame = +3
Query: 735 PPXXXRGGXPPPXGXKXXPGXPPPXPPXLXPPXVXPPPX*PXXP 866
PP PP K G PP PP PP P P P
Sbjct: 1189 PPVPPPSEAPPVP--KPSVGVPPVPPPSTAPPVPTPSAGLPPVP 1230
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 31.9 bits (69), Expect = 0.14
Identities = 17/51 (33%), Positives = 18/51 (35%)
Frame = +3
Query: 735 PPXXXRGGXPPPXGXKXXPGXPPPXPPXLXPPXVXPPPX*PXXPCXPXPPL 887
PP + PP PP PP PP PP P P PPL
Sbjct: 1690 PPVRPQSAAPPQMS-----APTPPPPPMSVPPPPSAPPMPAGPPSAPPPPL 1735
Score = 28.3 bits (60), Expect = 1.7
Identities = 18/54 (33%), Positives = 18/54 (33%), Gaps = 2/54 (3%)
Frame = +3
Query: 726 QKXPPXXXRGGXPPPXGXKXXPGXPPPXPPXLXPPXVXPPPX*P--XXPCXPXP 881
Q P PPP P PP PP P PPP P P P P
Sbjct: 1695 QSAAPPQMSAPTPPPPPMSVPP--PPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
Score = 26.2 bits (55), Expect = 7.0
Identities = 19/64 (29%), Positives = 21/64 (32%)
Frame = +1
Query: 691 PQAPPPXLLXXXKXFPPXXFGGGXPPXXXXKXSXVXPPRXPPXSXPPXFXPPPXNXXXXA 870
P + PP + PP PP S PP PP P PPP A
Sbjct: 1686 PVSTPP--VRPQSAAPPQMSAPTPPPPPM---SVPPPPSAPPMPAGPPSAPPPPLPASSA 1740
Query: 871 PPXP 882
P P
Sbjct: 1741 PSVP 1744
Score = 26.2 bits (55), Expect = 7.0
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = +2
Query: 908 SXIPPXXFXPRXPPPPXGXPTP 973
S PP P PPPP P P
Sbjct: 1696 SAAPPQMSAPTPPPPPMSVPPP 1717
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.5 bits (68), Expect = 0.19
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = +3
Query: 735 PPXXXRGGXPPPXGXKXXPGXPPPXPPXLXPPXV 836
PP GG PPP G PP PP PP V
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPP-PPPAV 785
Score = 30.3 bits (65), Expect = 0.43
Identities = 19/49 (38%), Positives = 20/49 (40%), Gaps = 7/49 (14%)
Frame = +3
Query: 798 PPPXPPXLXPPXVXP-----PPX*PXX--PCXPXPPLWEXGXGXPLSPP 923
PPP PP + P P PP P P P PP G G P PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 28.3 bits (60), Expect = 1.7
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +1
Query: 799 PPRXPPXSXPPXFXPPPXNXXXXAPPXPP 885
PP P PP PPP PP PP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 27.5 bits (58), Expect = 3.0
Identities = 17/52 (32%), Positives = 17/52 (32%)
Frame = +3
Query: 729 KXPPXXXRGGXPPPXGXKXXPGXPPPXPPXLXPPXVXPPPX*PXXPCXPXPP 884
K PP P P PPP P PP PPP P PP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIP-VPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 27.5 bits (58), Expect = 3.0
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = +3
Query: 762 PPPXGXKXXPGXPPPXPPXLXPPXVXPPPX*PXXP 866
PPP G PPP PP PPP P P
Sbjct: 752 PPPAPIM---GGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 25.8 bits (54), Expect = 9.3
Identities = 10/26 (38%), Positives = 11/26 (42%)
Frame = +2
Query: 692 PRPPPPXSSXXPKXSPXXXSGGGPPP 769
P P P P P +G GPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPP 777
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.1 bits (67), Expect = 0.25
Identities = 18/54 (33%), Positives = 19/54 (35%)
Frame = +3
Query: 762 PPPXGXKXXPGXPPPXPPXLXPPXVXPPPX*PXXPCXPXPPLWEXGXGXPLSPP 923
PP P PP PP L PP P P P P G P +PP
Sbjct: 420 PPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLP-----AGMPAAPP 468
Score = 30.3 bits (65), Expect = 0.43
Identities = 27/104 (25%), Positives = 33/104 (31%), Gaps = 6/104 (5%)
Frame = +1
Query: 598 QPRGPPXQKXFSQXXPPXXQTPXNRXRXGXXPQAPPPXLLXXXKXFPPXXFGGGXPPXXX 777
+P PP ++ PP N P PPP P G PP
Sbjct: 310 RPPPPPPPSRRNRGKPPIGNGSSN----SSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPP 365
Query: 778 XKXSXVXPPRXPPXSX------PPXFXPPPXNXXXXAPPXPPFG 891
+ + + PP S PP PPP AP PP G
Sbjct: 366 PRSAPSTGRQPPPLSSSRAVSNPPA--PPPAIPGRSAPALPPLG 407
Score = 27.5 bits (58), Expect = 3.0
Identities = 18/66 (27%), Positives = 18/66 (27%)
Frame = +3
Query: 735 PPXXXRGGXPPPXGXKXXPGXPPPXPPXLXPPXVXPPPX*PXXPCXPXPPLWEXGXGXPL 914
PP R PP G PP PP P P P PP
Sbjct: 315 PPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGR 374
Query: 915 SPPXAS 932
PP S
Sbjct: 375 QPPPLS 380
Score = 27.5 bits (58), Expect = 3.0
Identities = 37/142 (26%), Positives = 42/142 (29%), Gaps = 19/142 (13%)
Frame = +1
Query: 517 PKXPLAPXXSGGGXXFPPPXGGFXXSLQPRGPPXQKXFSQXXPPXXQTPXNRXRXGXXPQ 696
P P P + G PP G S P PP + PP P + R P
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQG---RSAPPPPPPRSAPSTGRQPP----PLSSSRAVSNPP 389
Query: 697 APPPXLLXXXKX-FPPXXFGGGX-------PPXXXXKXSXVXPPRXPPX------SXPPX 834
APPP + PP PP PP PP + PP
Sbjct: 390 APPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPL 449
Query: 835 -----FXPPPXNXXXXAPPXPP 885
PP APP PP
Sbjct: 450 PPSAPIAPPLPAGMPAAPPLPP 471
Score = 25.8 bits (54), Expect = 9.3
Identities = 11/33 (33%), Positives = 13/33 (39%)
Frame = +2
Query: 872 PLXPPLGXRXGXSXIPPXXFXPRXPPPPXGXPT 970
P PP G +PP PPPP P+
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPS 371
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 30.3 bits (65), Expect = 0.43
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +3
Query: 798 PPPXPPXLXPPXVXPPPX*P 857
PPP PP PP PPP P
Sbjct: 11 PPPPPPGFEPPSQPPPPPPP 30
Score = 26.6 bits (56), Expect = 5.3
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = +1
Query: 811 PPXSXPPXFXPPPXNXXXXAPPXPPFG 891
PP + PP PP PP PP G
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPG 31
Score = 25.8 bits (54), Expect = 9.3
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 762 PPPXGXKXXPGXPPPXPP 815
PPP G + P PPP PP
Sbjct: 13 PPPPGFEP-PSQPPPPPP 29
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 29.1 bits (62), Expect = 0.99
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = -2
Query: 886 RGGKGXXGXXG*XGGGXTXGGXXXGGXGGGXPG 788
RGG+G G G GG GG G GG G
Sbjct: 450 RGGRGGFGGRGGFGGRGGFGGGRGRGRGGARSG 482
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 28.3 bits (60), Expect = 1.7
Identities = 18/61 (29%), Positives = 18/61 (29%), Gaps = 8/61 (13%)
Frame = +3
Query: 765 PPXGXKXXPGXPPPXPPXLXP--------PXVXPPPX*PXXPCXPXPPLWEXGXGXPLSP 920
PP P PPP P P P PPP P P P P P
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMP 198
Query: 921 P 923
P
Sbjct: 199 P 199
Score = 26.6 bits (56), Expect = 5.3
Identities = 17/48 (35%), Positives = 17/48 (35%), Gaps = 7/48 (14%)
Frame = +3
Query: 762 PPPXGXKXXPGXPPPXPPXLXPP-----XVXPPPX*PXXP--CXPXPP 884
P P P PP P L PP V PP P P P PP
Sbjct: 152 PSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPP 199
Score = 26.2 bits (55), Expect = 7.0
Identities = 11/38 (28%), Positives = 13/38 (34%)
Frame = +3
Query: 735 PPXXXRGGXPPPXGXKXXPGXPPPXPPXLXPPXVXPPP 848
PP P P PP PP + PP + P
Sbjct: 173 PPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQAP 210
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 27.9 bits (59), Expect = 2.3
Identities = 21/51 (41%), Positives = 22/51 (43%)
Frame = -2
Query: 886 RGGKGXXGXXG*XGGGXTXGGXXXGGXGGGXPGXXXXPXGGGXPPRXXXGG 734
RGG+G G G G G GG GG GGG G GG R GG
Sbjct: 8 RGGRG--GSRG--GRGGFNGGR--GGFGGGRGGARGGGRGGARGGRGGRGG 52
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 25.8 bits (54), Expect = 9.3
Identities = 17/58 (29%), Positives = 18/58 (31%), Gaps = 5/58 (8%)
Frame = +3
Query: 765 PPXGXKXXPGXPPPXPPXLXPPXVXPPPX*PXXPCXP-----XPPLWEXGXGXPLSPP 923
P PG P PP P P P P P P PP+ G P P
Sbjct: 479 PSQNAPFIPGTSAPLPPTTFAPPGVPLPPIPGAPGMPNLNMSQPPMVPPGMALPPGMP 536
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,091,436
Number of Sequences: 5004
Number of extensions: 28350
Number of successful extensions: 267
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 501293686
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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