Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_L09
(1062 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P03093 Cluster: Capsid protein VP2; n=217; Polyomavirus... 58 4e-07
UniRef50_P24849 Cluster: Capsid protein VP2; n=2; Bovine polyoma... 48 3e-04
UniRef50_P24596 Cluster: Capsid protein VP2; n=4; Murine pneumot... 48 5e-04
UniRef50_Q80FI5 Cluster: Putative uncharacterized protein; n=2; ... 45 0.004
UniRef50_Q20HX9 Cluster: Putative VP2; n=2; Finch polyomavirus|R... 42 0.027
UniRef50_Q20HY5 Cluster: Putative VP2; n=2; Crow polyomavirus|Re... 42 0.036
UniRef50_P03098 Cluster: Capsid protein VP2; n=5; Hamster polyom... 42 0.036
UniRef50_P04011 Cluster: Capsid protein VP2; n=9; African green ... 39 0.19
UniRef50_P03096 Cluster: Capsid protein VP2; n=13; Polyomavirus|... 38 0.58
UniRef50_P13892 Cluster: Capsid protein VP2; n=27; Budgerigar fl... 36 1.3
>UniRef50_P03093 Cluster: Capsid protein VP2; n=217;
Polyomavirus|Rep: Capsid protein VP2 - Simian virus 40
(SV40)
Length = 352
Score = 58.0 bits (134), Expect = 4e-07
Identities = 28/35 (80%), Positives = 29/35 (82%)
Frame = +2
Query: 197 FISGPGSGGGANQRTAPQWMLPLLLXLYGSVTSAL 301
FI + GGANQRTAPQWMLPLLL LYGSVTSAL
Sbjct: 276 FIEKFEAPGGANQRTAPQWMLPLLLGLYGSVTSAL 310
>UniRef50_P24849 Cluster: Capsid protein VP2; n=2; Bovine
polyomavirus|Rep: Capsid protein VP2 - Bovine
polyomavirus (BPyV)
Length = 353
Score = 48.4 bits (110), Expect = 3e-04
Identities = 23/48 (47%), Positives = 29/48 (60%)
Frame = +2
Query: 155 EKPES*LVSLVFLSFISGPGSGGGANQRTAPQWMLPLLLXLYGSVTSA 298
EK E + V ++ G+ GGA QR AP W+LPLLL LYG +T A
Sbjct: 251 EKGEEGMKHPVSAEYVEKYGAPGGAEQRVAPDWLLPLLLGLYGDLTPA 298
>UniRef50_P24596 Cluster: Capsid protein VP2; n=4; Murine
pneumotropic virus|Rep: Capsid protein VP2 - Murine
polyomavirus (strain Kilham) (MPyV)
Length = 341
Score = 47.6 bits (108), Expect = 5e-04
Identities = 23/49 (46%), Positives = 31/49 (63%)
Frame = +2
Query: 176 VSLVFLSFISGPGSGGGANQRTAPQWMLPLLLXLYGSVTSALSTAAADL 322
VS +++ + PG GANQR+AP WMLPLLL LYG +T + +L
Sbjct: 260 VSATYVTKVDPPG---GANQRSAPDWMLPLLLGLYGDLTPSWKDTLEEL 305
>UniRef50_Q80FI5 Cluster: Putative uncharacterized protein; n=2;
Goose hemorrhagic polyomavirus|Rep: Putative
uncharacterized protein - Goose hemorrhagic polyomavirus
Length = 326
Score = 44.8 bits (101), Expect = 0.004
Identities = 18/23 (78%), Positives = 20/23 (86%)
Frame = +2
Query: 221 GGANQRTAPQWMLPLLLXLYGSV 289
GGANQR AP WMLPL+L LYG+V
Sbjct: 257 GGANQRAAPDWMLPLILGLYGTV 279
>UniRef50_Q20HX9 Cluster: Putative VP2; n=2; Finch polyomavirus|Rep:
Putative VP2 - Finch polyomavirus
Length = 354
Score = 41.9 bits (94), Expect = 0.027
Identities = 17/24 (70%), Positives = 20/24 (83%)
Frame = +2
Query: 221 GGANQRTAPQWMLPLLLXLYGSVT 292
GGA+QR AP W+LPLLL LYG +T
Sbjct: 286 GGAHQRHAPDWLLPLLLGLYGDLT 309
>UniRef50_Q20HY5 Cluster: Putative VP2; n=2; Crow polyomavirus|Rep:
Putative VP2 - Crow polyomavirus
Length = 333
Score = 41.5 bits (93), Expect = 0.036
Identities = 16/23 (69%), Positives = 20/23 (86%)
Frame = +2
Query: 221 GGANQRTAPQWMLPLLLXLYGSV 289
GGA+QR+ P WMLPL+L LYG+V
Sbjct: 263 GGAHQRSCPDWMLPLILGLYGTV 285
>UniRef50_P03098 Cluster: Capsid protein VP2; n=5; Hamster
polyomavirus|Rep: Capsid protein VP2 - Hamster
polyomavirus (HaPyV)
Length = 345
Score = 41.5 bits (93), Expect = 0.036
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +2
Query: 221 GGANQRTAPQWMLPLLLXLYGSVTSALST 307
GGA+QR P WMLPL+L LYG ++ T
Sbjct: 300 GGAHQRVTPDWMLPLILGLYGDISPTWQT 328
>UniRef50_P04011 Cluster: Capsid protein VP2; n=9; African green
monkey polyomavirus|Rep: Capsid protein VP2 -
B-lymphotropic polyomavirus (LPV)
Length = 356
Score = 39.1 bits (87), Expect = 0.19
Identities = 15/24 (62%), Positives = 18/24 (75%)
Frame = +2
Query: 221 GGANQRTAPQWMLPLLLXLYGSVT 292
GGA+QR WMLPL+L LYG +T
Sbjct: 279 GGAHQRVTQDWMLPLILGLYGDIT 302
>UniRef50_P03096 Cluster: Capsid protein VP2; n=13;
Polyomavirus|Rep: Capsid protein VP2 - Murine
polyomavirus (strain A2) (MPyV)
Length = 319
Score = 37.5 bits (83), Expect = 0.58
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +2
Query: 227 ANQRTAPQWMLPLLLXLYGSVTSALST 307
++QR P WMLPL+L LYG +T +T
Sbjct: 279 SHQRVTPDWMLPLILGLYGDITPTWAT 305
>UniRef50_P13892 Cluster: Capsid protein VP2; n=27; Budgerigar
fledgling disease polyomavirus|Rep: Capsid protein VP2 -
Budgerigar fledgling disease virus (BFDV)
Length = 341
Score = 36.3 bits (80), Expect = 1.3
Identities = 15/24 (62%), Positives = 18/24 (75%)
Frame = +2
Query: 221 GGANQRTAPQWMLPLLLXLYGSVT 292
GGA QR A W+LPL+L LYG +T
Sbjct: 273 GGAMQRHANDWLLPLILGLYGDLT 296
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 629,189,997
Number of Sequences: 1657284
Number of extensions: 8442494
Number of successful extensions: 13990
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13975
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 102879334404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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