Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_L08
         (865 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8F11.07c |cdc24||DNA replication protein Cdc24|Schizosacchar...    29   0.64 
SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr 3...    28   1.5  

>SPAC8F11.07c |cdc24||DNA replication protein
           Cdc24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 501

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +2

Query: 77  ADFIVIG*SSAHLLSNIRLFLTSHFLRNSLC 169
           +D+  +  ++  +LSN+   L+S+FLRN LC
Sbjct: 344 SDYSCVSDTTTEILSNLENPLSSNFLRNDLC 374


>SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 449

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/15 (80%), Positives = 12/15 (80%)
 Frame = +1

Query: 274 KVYEINKFKKHNLHF 318
           KV EINK KK NLHF
Sbjct: 4   KVEEINKLKKKNLHF 18


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,832,284
Number of Sequences: 5004
Number of extensions: 25522
Number of successful extensions: 29
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)