Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP01_F_L07
(938 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58682-1|AAB07066.1| 69|Homo sapiens ribosomal protein S28 pro... 87 7e-17
L05091-1|AAC15855.1| 69|Homo sapiens ribosomal protein S28 pro... 87 7e-17
CR457055-1|CAG33336.1| 69|Homo sapiens RPS28 protein. 87 7e-17
BC070218-1|AAH70218.1| 69|Homo sapiens ribosomal protein S28 p... 87 7e-17
BC070217-1|AAH70217.1| 69|Homo sapiens ribosomal protein S28 p... 87 7e-17
BC021239-1|AAH21239.1| 69|Homo sapiens ribosomal protein S28 p... 87 7e-17
BC000354-1|AAH00354.1| 69|Homo sapiens ribosomal protein S28 p... 87 7e-17
AB061846-1|BAB79484.1| 69|Homo sapiens ribosomal protein S28 p... 87 7e-17
AL023513-1|CAI19979.1| 57|Homo sapiens protein ( Human DNA seq... 43 0.002
AB209695-1|BAD92932.1| 1491|Homo sapiens N-methyl-D-aspartate re... 31 8.0
>U58682-1|AAB07066.1| 69|Homo sapiens ribosomal protein S28
protein.
Length = 69
Score = 87.4 bits (207), Expect = 7e-17
Identities = 40/51 (78%), Positives = 46/51 (90%)
Frame = +1
Query: 121 KPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 273
+P LARV KVLGRTGSQGQCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 7 QPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
>L05091-1|AAC15855.1| 69|Homo sapiens ribosomal protein S28
protein.
Length = 69
Score = 87.4 bits (207), Expect = 7e-17
Identities = 40/51 (78%), Positives = 46/51 (90%)
Frame = +1
Query: 121 KPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 273
+P LARV KVLGRTGSQGQCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 7 QPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
>CR457055-1|CAG33336.1| 69|Homo sapiens RPS28 protein.
Length = 69
Score = 87.4 bits (207), Expect = 7e-17
Identities = 40/51 (78%), Positives = 46/51 (90%)
Frame = +1
Query: 121 KPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 273
+P LARV KVLGRTGSQGQCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 7 QPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
>BC070218-1|AAH70218.1| 69|Homo sapiens ribosomal protein S28
protein.
Length = 69
Score = 87.4 bits (207), Expect = 7e-17
Identities = 40/51 (78%), Positives = 46/51 (90%)
Frame = +1
Query: 121 KPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 273
+P LARV KVLGRTGSQGQCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 7 QPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
>BC070217-1|AAH70217.1| 69|Homo sapiens ribosomal protein S28
protein.
Length = 69
Score = 87.4 bits (207), Expect = 7e-17
Identities = 40/51 (78%), Positives = 46/51 (90%)
Frame = +1
Query: 121 KPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 273
+P LARV KVLGRTGSQGQCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 7 QPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
>BC021239-1|AAH21239.1| 69|Homo sapiens ribosomal protein S28
protein.
Length = 69
Score = 87.4 bits (207), Expect = 7e-17
Identities = 40/51 (78%), Positives = 46/51 (90%)
Frame = +1
Query: 121 KPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 273
+P LARV KVLGRTGSQGQCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 7 QPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
>BC000354-1|AAH00354.1| 69|Homo sapiens ribosomal protein S28
protein.
Length = 69
Score = 87.4 bits (207), Expect = 7e-17
Identities = 40/51 (78%), Positives = 46/51 (90%)
Frame = +1
Query: 121 KPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 273
+P LARV KVLGRTGSQGQCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 7 QPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
>AB061846-1|BAB79484.1| 69|Homo sapiens ribosomal protein S28
protein.
Length = 69
Score = 87.4 bits (207), Expect = 7e-17
Identities = 40/51 (78%), Positives = 46/51 (90%)
Frame = +1
Query: 121 KPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 273
+P LARV KVLGRTGSQGQCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 7 QPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
>AL023513-1|CAI19979.1| 57|Homo sapiens protein ( Human DNA
sequence from clone RP1-268D13 on chromosome
22q11.21-12.2. ).
Length = 57
Score = 42.7 bits (96), Expect = 0.002
Identities = 20/37 (54%), Positives = 26/37 (70%)
Frame = +1
Query: 124 PNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIR 234
P L + KVLGRT SQGQCT+V VEF+ S+++ R
Sbjct: 8 PVKLVKATKVLGRTSSQGQCTRVCVEFMVSQSKRLRR 44
>AB209695-1|BAD92932.1| 1491|Homo sapiens N-methyl-D-aspartate
receptor subunit 2A precursor variant protein.
Length = 1491
Score = 30.7 bits (66), Expect = 8.0
Identities = 24/73 (32%), Positives = 31/73 (42%)
Frame = +3
Query: 60 RQLWCTCVNCIKLDITSQNG*TQRSCSCRESTRPYWFSGPVYSSEGRVHWGDQPSDHQER 239
RQLW V+ I+ D SQN +QR + E+ R + P Y E H SD E
Sbjct: 1038 RQLWKKSVDSIRQDSLSQNPVSQRDEATAEN-RTHSLKSPRYLPEEMAH-----SDFSET 1091
Query: 240 ERTGP*RRHPHSS 278
R P +S
Sbjct: 1092 SNRATCHREPDNS 1104
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,476,630
Number of Sequences: 237096
Number of extensions: 1201203
Number of successful extensions: 2255
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2255
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12325533684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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