Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_L07
         (938 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g03850.1 68418.m00356 40S ribosomal protein S28 (RPS28B) ribo...    66   2e-11
At3g10090.1 68416.m01209 40S ribosomal protein S28 (RPS28A) simi...    66   2e-11
At5g64140.1 68418.m08054 40S ribosomal protein S28 (RPS28C)            65   6e-11
At4g35500.2 68417.m05045 protein kinase family protein contains ...    29   5.9  
At4g35500.1 68417.m05044 protein kinase family protein contains ...    29   5.9  
At5g19460.1 68418.m02319 MutT/nudix family protein similar to SP...    28   7.8  
At1g17270.1 68414.m02103 expressed protein                             28   7.8  

>At5g03850.1 68418.m00356 40S ribosomal protein S28 (RPS28B)
           ribosomal protein S28, Arabidopsis thaliana,
           EMBL:ATRP28A
          Length = 64

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 34/53 (64%), Positives = 42/53 (79%)
 Frame = +1

Query: 115 MDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 273
           MD     A VVKV+GRTGS+GQ TQV+V+F  ++ R I+RNVKGPVR+GDILT
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFT-DSDRYIMRNVKGPVREGDILT 52


>At3g10090.1 68416.m01209 40S ribosomal protein S28 (RPS28A) similar
           to ribosomal protein S28 GB:P34789 [Arabidopsis
           thaliana]
          Length = 64

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 34/53 (64%), Positives = 42/53 (79%)
 Frame = +1

Query: 115 MDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 273
           MD     A VVKV+GRTGS+GQ TQV+V+F  ++ R I+RNVKGPVR+GDILT
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFT-DSDRYIMRNVKGPVREGDILT 52


>At5g64140.1 68418.m08054 40S ribosomal protein S28 (RPS28C)
          Length = 64

 Score = 65.3 bits (152), Expect = 6e-11
 Identities = 33/53 (62%), Positives = 42/53 (79%)
 Frame = +1

Query: 115 MDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 273
           MD     A VVKV+GRTGS+GQ TQV+V+F  ++ R I+RNVKGPVR+GD+LT
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFT-DSDRFIMRNVKGPVREGDVLT 52


>At4g35500.2 68417.m05045 protein kinase family protein contains
           eukaryotic protein kinase domain, INTERPRO:IPR000719
          Length = 439

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = +1

Query: 91  LSSILQAKMDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIR 234
           LS+     +DK   + R++     +G  GQ   + +EF+G++  ++IR
Sbjct: 87  LSAAADGDLDKTKCVVRLIDHFKHSGPNGQHLCMVLEFLGDSLLRLIR 134


>At4g35500.1 68417.m05044 protein kinase family protein contains
           eukaryotic protein kinase domain, INTERPRO:IPR000719
          Length = 438

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = +1

Query: 91  LSSILQAKMDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIR 234
           LS+     +DK   + R++     +G  GQ   + +EF+G++  ++IR
Sbjct: 86  LSAAADGDLDKTKCVVRLIDHFKHSGPNGQHLCMVLEFLGDSLLRLIR 133


>At5g19460.1 68418.m02319 MutT/nudix family protein similar to
           SP|P41888 Thiamine pyrophosphokinase (EC 2.7.6.2) (TPK)
           (Thiamine kinase) {Schizosaccharomyces pombe}; contains
           Pfam profile PF00293: NUDIX domain
          Length = 374

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +1

Query: 43  FCFSKHASFGARV--LIVLSSILQAKMDKPNVLARVVKVLGRTG 168
           F FS++ S   RV   + L+ +LQ   D+   +A V+K+LG  G
Sbjct: 126 FTFSQNGSCPDRVDGYVTLNLMLQKPEDRTRAVADVIKILGDKG 169


>At1g17270.1 68414.m02103 expressed protein
          Length = 564

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = +1

Query: 46  CFSKHASFGA---RVLIVLSSILQAKMDKPNVLARVVKVLGRT 165
           C  KH  F A   RVL++ SS    + DK   + R+   LGRT
Sbjct: 232 CLEKHMFFAALLDRVLVIPSSKFDYQYDKVIDIERINTCLGRT 274


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,183,808
Number of Sequences: 28952
Number of extensions: 182673
Number of successful extensions: 418
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2246578488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)