Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_L06
         (1142 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.91 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.2  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      24   3.3  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   8.5  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.5 bits (63), Expect = 0.91
 Identities = 13/24 (54%), Positives = 13/24 (54%)
 Frame = -1

Query: 599 PPPPPPXXXFFFFYXLXXPPPPPP 528
           PPPPPP   F        PPPPPP
Sbjct: 9   PPPPPPPPGFE--PPSQPPPPPPP 30



 Score = 28.7 bits (61), Expect = 1.6
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +2

Query: 665 PPPPXXKXLXXXXXPPPPPP 724
           PPPP          PPPPPP
Sbjct: 10  PPPPPPPGFEPPSQPPPPPP 29



 Score = 27.1 bits (57), Expect = 4.9
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +2

Query: 665 PPPPXXKXLXXXXXPPPPPP 724
           PPPP          PPPPPP
Sbjct: 11  PPPPPPGFEPPSQPPPPPPP 30


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +2

Query: 665 PPPPXXKXLXXXXXPPPPPP 724
           PPPP    +     PPPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPP 781



 Score = 27.9 bits (59), Expect = 2.8
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -1

Query: 599 PPPPPPXXXFFFFYXLXXPPPPPP 528
           PPPPPP            PPPPPP
Sbjct: 761 PPPPPPPPG---VAGAGPPPPPPP 781



 Score = 27.9 bits (59), Expect = 2.8
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +2

Query: 665 PPPPXXKXLXXXXXPPPPPP 724
           PPPP          PPPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPPP 782



 Score = 27.1 bits (57), Expect = 4.9
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = -1

Query: 596 PPPPPXXXFFFFYXLXXPPPPPP 528
           PPPPP            PPPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 27.1 bits (57), Expect = 4.9
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +2

Query: 665 PPPPXXKXLXXXXXPPPPPP 724
           PPPP          PPPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPP 780



 Score = 26.6 bits (56), Expect = 6.4
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +2

Query: 665 PPPPXXKXLXXXXXPPPPPP 724
           PPPP          PPPPPP
Sbjct: 764 PPPPPGVAGAGPPPPPPPPP 783


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 23.8 bits (49), Expect(2) = 3.3
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = -3

Query: 804 FFFFFFFFF 778
           +FFFFFFFF
Sbjct: 77  WFFFFFFFF 85



 Score = 23.8 bits (49), Expect(2) = 3.3
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = -1

Query: 803 FFFFFFFFF 777
           +FFFFFFFF
Sbjct: 77  WFFFFFFFF 85



 Score = 22.2 bits (45), Expect(2) = 3.3
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -3

Query: 885 FFFFFFFXFF 856
           FF++FFF FF
Sbjct: 74  FFYWFFFFFF 83



 Score = 22.2 bits (45), Expect(2) = 3.3
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -1

Query: 887 FFFFFFFFXF 858
           F++FFFFF F
Sbjct: 75  FYWFFFFFFF 84


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 15/39 (38%), Positives = 15/39 (38%), Gaps = 5/39 (12%)
 Frame = -1

Query: 599 PPPPPPXXXFFFFYXLXX-----PPPPPPXKXFLXGXXP 498
           PPPPPP         L       PPPPPP      G  P
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQP 376


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,079,052
Number of Sequences: 5004
Number of extensions: 28532
Number of successful extensions: 252
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 609607692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)